# This file is the result of combining several RDB files, specifically # T0219.t04.dssp-ebghstl.rdb (weight 1.53986) # T0219.t04.stride-ebghtl.rdb (weight 1.24869) # T0219.t04.str2.rdb (weight 1.54758) # T0219.t04.alpha.rdb (weight 0.659012) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0219.t04.dssp-ebghstl.rdb # ============================================ # TARGET T0219 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0219.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 364 # # ============================================ # Comments from T0219.t04.stride-ebghtl.rdb # ============================================ # TARGET T0219 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0219.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 364 # # ============================================ # Comments from T0219.t04.str2.rdb # ============================================ # TARGET T0219 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0219.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 364 # # ============================================ # Comments from T0219.t04.alpha.rdb # ============================================ # TARGET T0219 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 ABCDEFGHIST ) # The input amino acid frequencies were determined from # alignment T0219.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 364 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.0671 0.0466 0.8863 2 S 0.0781 0.1078 0.8141 3 A 0.0954 0.1711 0.7335 4 V 0.1087 0.1244 0.7669 5 T 0.1083 0.1280 0.7637 6 E 0.0570 0.4304 0.5126 7 S 0.0674 0.4866 0.4460 8 V 0.1187 0.4703 0.4110 9 L 0.2210 0.3606 0.4184 10 E 0.2804 0.3789 0.3407 11 S 0.3038 0.3374 0.3588 12 I 0.2576 0.2165 0.5259 13 I 0.1842 0.1198 0.6959 14 S 0.0948 0.0564 0.8488 15 P 0.0744 0.0687 0.8569 16 V 0.1192 0.0252 0.8556 17 T 0.0939 0.0234 0.8828 18 M 0.0048 0.9469 0.0483 19 S 0.0047 0.9589 0.0365 20 E 0.0047 0.9597 0.0356 21 F 0.0049 0.9583 0.0368 22 L 0.0052 0.9491 0.0457 23 E 0.0055 0.9276 0.0669 24 E 0.0069 0.8626 0.1305 25 Y 0.0219 0.6409 0.3372 26 W 0.0567 0.1769 0.7664 27 P 0.0384 0.1524 0.8092 28 V 0.0652 0.0990 0.8359 29 K 0.1873 0.0169 0.7957 30 P 0.4180 0.0130 0.5690 31 L 0.8532 0.0093 0.1374 32 V 0.8900 0.0126 0.0974 33 A 0.8376 0.0206 0.1418 34 R 0.5672 0.0618 0.3710 35 G 0.2102 0.0524 0.7373 36 E 0.3312 0.0907 0.5781 37 V 0.2384 0.1955 0.5661 38 E 0.0954 0.3012 0.6034 39 R 0.0692 0.2680 0.6628 40 F 0.1472 0.1755 0.6774 41 T 0.1461 0.1704 0.6835 42 S 0.1748 0.1426 0.6826 43 I 0.0977 0.0569 0.8454 44 P 0.0392 0.1604 0.8004 45 G 0.0312 0.1218 0.8471 46 F 0.0684 0.1663 0.7653 47 E 0.0974 0.1549 0.7476 48 K 0.1122 0.1389 0.7489 49 V 0.0214 0.7615 0.2170 50 R 0.0136 0.8646 0.1218 51 T 0.0136 0.8892 0.0973 52 L 0.0059 0.9404 0.0537 53 E 0.0069 0.9398 0.0533 54 N 0.0083 0.9222 0.0695 55 V 0.0150 0.8641 0.1209 56 L 0.0374 0.7359 0.2267 57 A 0.0333 0.4687 0.4980 58 I 0.0499 0.2992 0.6510 59 Y 0.1162 0.1374 0.7464 60 N 0.1166 0.0664 0.8170 61 N 0.1630 0.0214 0.8157 62 P 0.2959 0.0291 0.6750 63 V 0.7016 0.0417 0.2567 64 M 0.7926 0.0330 0.1744 65 V 0.7487 0.0300 0.2213 66 V 0.5172 0.0633 0.4195 67 G 0.2289 0.0995 0.6716 68 D 0.1614 0.1717 0.6669 69 A 0.2627 0.2633 0.4740 70 V 0.4308 0.2735 0.2958 71 I 0.4240 0.2695 0.3065 72 E 0.3511 0.3171 0.3317 73 E 0.2618 0.3042 0.4339 74 S 0.1880 0.2596 0.5524 75 E 0.1059 0.2388 0.6552 76 G 0.1094 0.1470 0.7436 77 I 0.1561 0.1235 0.7204 78 T 0.1247 0.1303 0.7450 79 D 0.1099 0.2010 0.6890 80 R 0.1468 0.1937 0.6595 81 F 0.3060 0.1113 0.5827 82 L 0.4251 0.0671 0.5078 83 V 0.3653 0.0547 0.5800 84 S 0.1964 0.0325 0.7710 85 P 0.1152 0.1204 0.7644 86 A 0.0455 0.5737 0.3808 87 E 0.0501 0.6430 0.3069 88 A 0.0456 0.7009 0.2536 89 L 0.0476 0.7218 0.2306 90 E 0.0555 0.6718 0.2727 91 W 0.0727 0.6280 0.2993 92 Y 0.0746 0.5213 0.4041 93 E 0.0624 0.4538 0.4837 94 K 0.0637 0.3264 0.6099 95 G 0.0523 0.2575 0.6902 96 A 0.0995 0.3096 0.5909 97 A 0.1234 0.4802 0.3964 98 L 0.1220 0.5041 0.3738 99 E 0.1389 0.4781 0.3830 100 F 0.1300 0.4193 0.4507 101 D 0.1001 0.3251 0.5748 102 F 0.0916 0.2371 0.6714 103 T 0.0686 0.3701 0.5613 104 D 0.0369 0.5752 0.3879 105 L 0.0413 0.5833 0.3754 106 F 0.0393 0.5527 0.4080 107 I 0.0208 0.7341 0.2451 108 P 0.0084 0.8467 0.1449 109 Q 0.0097 0.8659 0.1244 110 V 0.0068 0.9187 0.0745 111 R 0.0054 0.9361 0.0585 112 R 0.0051 0.9365 0.0584 113 W 0.0052 0.9310 0.0638 114 I 0.0048 0.9418 0.0534 115 E 0.0050 0.9389 0.0561 116 K 0.0055 0.9228 0.0717 117 L 0.0070 0.8877 0.1053 118 K 0.0098 0.8502 0.1400 119 A 0.0068 0.8162 0.1770 120 E 0.0111 0.6923 0.2966 121 L 0.0734 0.4078 0.5188 122 R 0.0727 0.1260 0.8014 123 L 0.0706 0.0281 0.9012 124 P 0.0774 0.0592 0.8634 125 A 0.0733 0.1606 0.7661 126 G 0.0702 0.1274 0.8024 127 T 0.0996 0.0760 0.8244 128 S 0.1072 0.0933 0.7995 129 S 0.1573 0.0656 0.7770 130 K 0.3734 0.0308 0.5958 131 A 0.6634 0.0109 0.3257 132 I 0.8958 0.0060 0.0982 133 V 0.9222 0.0047 0.0731 134 Y 0.9200 0.0050 0.0750 135 A 0.8702 0.0117 0.1181 136 A 0.6256 0.0131 0.3613 137 K 0.2484 0.0288 0.7228 138 N 0.0644 0.0890 0.8466 139 G 0.0491 0.0707 0.8802 140 G 0.1307 0.0545 0.8148 141 G 0.1841 0.0542 0.7617 142 F 0.2152 0.0697 0.7152 143 K 0.1689 0.1461 0.6849 144 A 0.1763 0.2304 0.5934 145 H 0.2600 0.1937 0.5463 146 F 0.2610 0.2222 0.5168 147 D 0.2117 0.1789 0.6094 148 A 0.1368 0.2463 0.6169 149 Y 0.1542 0.1968 0.6490 150 T 0.1984 0.1388 0.6628 151 N 0.3870 0.0735 0.5395 152 L 0.7559 0.0291 0.2151 153 I 0.8778 0.0167 0.1054 154 F 0.8958 0.0118 0.0924 155 Q 0.8878 0.0107 0.1015 156 I 0.8081 0.0185 0.1734 157 Q 0.3942 0.0334 0.5724 158 G 0.2694 0.0284 0.7021 159 E 0.6055 0.0248 0.3697 160 K 0.8168 0.0085 0.1747 161 T 0.8818 0.0072 0.1110 162 W 0.9114 0.0057 0.0830 163 K 0.9067 0.0073 0.0860 164 L 0.8734 0.0093 0.1173 165 A 0.6137 0.0143 0.3719 166 K 0.3201 0.0248 0.6551 167 N 0.0679 0.3473 0.5848 168 E 0.0468 0.3990 0.5542 169 N 0.0623 0.3366 0.6011 170 V 0.0734 0.1944 0.7321 171 S 0.0608 0.1542 0.7850 172 N 0.0854 0.1197 0.7949 173 P 0.0986 0.2378 0.6637 174 M 0.1368 0.2462 0.6170 175 Q 0.2279 0.2331 0.5390 176 H 0.2450 0.1835 0.5714 177 Y 0.1913 0.1158 0.6929 178 D 0.1620 0.0782 0.7598 179 L 0.0586 0.4348 0.5066 180 S 0.0520 0.4082 0.5399 181 E 0.0597 0.3512 0.5891 182 A 0.0758 0.0631 0.8611 183 P 0.0307 0.1218 0.8474 184 Y 0.0429 0.0801 0.8770 185 Y 0.0926 0.0370 0.8704 186 P 0.0697 0.1537 0.7766 187 D 0.0345 0.5305 0.4350 188 D 0.0551 0.5816 0.3633 189 L 0.0752 0.6711 0.2538 190 Q 0.0895 0.6220 0.2885 191 S 0.0915 0.5828 0.3257 192 Y 0.1073 0.4697 0.4230 193 W 0.1438 0.2795 0.5768 194 K 0.1067 0.1619 0.7314 195 G 0.0687 0.0620 0.8693 196 D 0.0774 0.0259 0.8968 197 P 0.0669 0.0627 0.8704 198 P 0.0658 0.2087 0.7255 199 K 0.0194 0.5956 0.3850 200 E 0.0264 0.5232 0.4504 201 D 0.0457 0.3052 0.6491 202 L 0.0775 0.0289 0.8936 203 P 0.0650 0.0464 0.8886 204 D 0.1401 0.0519 0.8080 205 A 0.3268 0.0556 0.6176 206 E 0.5449 0.0310 0.4240 207 I 0.8763 0.0123 0.1114 208 V 0.8938 0.0073 0.0989 209 N 0.8758 0.0045 0.1198 210 L 0.6801 0.0068 0.3131 211 T 0.2594 0.0134 0.7272 212 P 0.0570 0.0694 0.8737 213 G 0.0585 0.0512 0.8903 214 T 0.3137 0.0234 0.6629 215 M 0.8756 0.0042 0.1202 216 L 0.9242 0.0035 0.0722 217 Y 0.9245 0.0038 0.0717 218 L 0.8057 0.0075 0.1868 219 P 0.3731 0.0135 0.6135 220 R 0.1040 0.0814 0.8146 221 G 0.1008 0.0664 0.8328 222 L 0.2884 0.0744 0.6372 223 W 0.4824 0.0568 0.4608 224 H 0.5754 0.0758 0.3488 225 S 0.5759 0.0763 0.3478 226 T 0.6314 0.0609 0.3077 227 K 0.6681 0.0436 0.2883 228 S 0.4043 0.0388 0.5569 229 D 0.1405 0.1223 0.7372 230 Q 0.1130 0.1390 0.7480 231 A 0.2369 0.1323 0.6308 232 T 0.4975 0.0603 0.4421 233 L 0.7955 0.0284 0.1761 234 A 0.8791 0.0191 0.1018 235 L 0.8621 0.0227 0.1152 236 N 0.7941 0.0267 0.1792 237 I 0.7051 0.0387 0.2561 238 T 0.5499 0.0438 0.4064 239 F 0.2607 0.0765 0.6628 240 G 0.1263 0.0610 0.8127 241 Q 0.0705 0.0333 0.8963 242 P 0.0113 0.6890 0.2997 243 A 0.0144 0.7411 0.2445 244 W 0.0087 0.8510 0.1403 245 L 0.0051 0.9363 0.0586 246 D 0.0050 0.9547 0.0403 247 L 0.0049 0.9590 0.0361 248 M 0.0049 0.9595 0.0356 249 L 0.0047 0.9605 0.0349 250 A 0.0046 0.9607 0.0347 251 A 0.0047 0.9586 0.0368 252 L 0.0048 0.9502 0.0450 253 R 0.0050 0.9401 0.0549 254 K 0.0073 0.8988 0.0938 255 K 0.0106 0.8220 0.1674 256 L 0.0296 0.5716 0.3988 257 I 0.0505 0.3141 0.6353 258 S 0.0314 0.2681 0.7005 259 D 0.0427 0.3164 0.6409 260 N 0.0504 0.4094 0.5402 261 R 0.0850 0.5194 0.3956 262 F 0.1084 0.6169 0.2746 263 R 0.0987 0.6530 0.2483 264 E 0.1141 0.6378 0.2481 265 L 0.1250 0.6154 0.2595 266 A 0.1703 0.4355 0.3941 267 V 0.1565 0.3380 0.5055 268 N 0.1450 0.2285 0.6265 269 H 0.0818 0.5118 0.4064 270 Q 0.0812 0.5390 0.3798 271 S 0.0752 0.5055 0.4194 272 L 0.0605 0.4549 0.4847 273 H 0.0686 0.4094 0.5220 274 E 0.0637 0.4574 0.4789 275 S 0.0780 0.3507 0.5713 276 S 0.0737 0.2554 0.6709 277 K 0.0106 0.7632 0.2262 278 S 0.0064 0.8759 0.1177 279 E 0.0086 0.8801 0.1113 280 L 0.0091 0.8812 0.1097 281 N 0.0070 0.9005 0.0924 282 G 0.0049 0.9198 0.0753 283 Y 0.0052 0.9276 0.0672 284 L 0.0047 0.9522 0.0431 285 E 0.0047 0.9597 0.0357 286 S 0.0047 0.9596 0.0357 287 L 0.0047 0.9565 0.0388 288 I 0.0047 0.9571 0.0382 289 Q 0.0048 0.9527 0.0425 290 T 0.0052 0.9357 0.0591 291 L 0.0063 0.8930 0.1007 292 S 0.0081 0.7997 0.1922 293 E 0.0084 0.7039 0.2877 294 N 0.0172 0.5763 0.4065 295 A 0.0141 0.6681 0.3178 296 E 0.0109 0.6554 0.3336 297 T 0.0207 0.5814 0.3979 298 L 0.0763 0.3225 0.6013 299 T 0.0523 0.1451 0.8026 300 P 0.0117 0.7777 0.2106 301 E 0.0093 0.8325 0.1583 302 Q 0.0137 0.8469 0.1394 303 I 0.0247 0.8054 0.1699 304 F 0.0336 0.7339 0.2324 305 Q 0.0452 0.6197 0.3351 306 S 0.0562 0.5030 0.4408 307 Q 0.0598 0.4396 0.5006 308 D 0.0605 0.3355 0.6040 309 S 0.0339 0.3498 0.6163 310 D 0.0479 0.2317 0.7204 311 F 0.0816 0.0769 0.8415 312 D 0.0691 0.0462 0.8847 313 P 0.0130 0.5963 0.3907 314 Y 0.0244 0.6031 0.3725 315 Q 0.0537 0.5975 0.3488 316 S 0.0706 0.4804 0.4490 317 T 0.0464 0.5965 0.3571 318 Q 0.0343 0.7682 0.1975 319 L 0.0301 0.8304 0.1395 320 V 0.0379 0.8307 0.1314 321 F 0.0432 0.8415 0.1153 322 R 0.0442 0.8591 0.0967 323 Q 0.0486 0.8272 0.1242 324 L 0.0468 0.7810 0.1722 325 L 0.0900 0.6376 0.2724 326 T 0.1221 0.5602 0.3178 327 S 0.1735 0.4648 0.3617 328 Y 0.2315 0.2616 0.5070 329 K 0.2146 0.1517 0.6337 330 F 0.1016 0.0541 0.8442