# List of top-scoring protein chains for T0219.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iz3A 349 1.72e-25 b.82.2.6 83831 1h2kA 349 1.82e-25 b.82.2.6 76572 1mzeA 351 1.83e-25 b.82.2.6 79694 2cavA 445 6.72e-03 1dgwA b.82.1.2 28094 b.82.1.2 28095 1a8s 273 6.04e-02 1brt c.69.1.12 34710 2arcA 164 6.45e-02 2arcA b.82.4.1 28148 2ara 149 6.96e-02 2arcA b.82.4.1 28152 1cauB 184 7.75e-02 1caxB b.82.1.2 28103 2aacA 177 8.64e-02 2arcA b.82.4.1 28150 1ipjA 416 1.53e-01 b.82.1.2 71258 b.82.1.2 71259 1fi2A 201 1.54e-01 1fi2A b.82.1.2 59845 1ipkA 416 1.55e-01 b.82.1.2 71264 b.82.1.2 71265 1qwrA 319 1.73e-01 1j3qA 190 2.94e-01 1qxrA 189 6.88e-01 1a8q 274 1.00e+00 1brt c.69.1.12 34702 1g8sA 230 1.03e+00 1o1yA 239 1.83e+00 c.23.16.1 86554 1jm6A 407 2.26e+00 a.29.5.1 66876 d.122.1.4 66877 1v7nV 163 2.91e+00 1gk5A 49 3.08e+00 g.3.11.1 70209 1egf 53 3.59e+00 1egf g.3.11.1 44290 1cauA 181 3.71e+00 1dgwA b.82.1.2 28102 1dgwA 178 3.80e+00 1dgwA b.82.1.2 28090 1hfp 186 4.27e+00 1aoeA c.71.1.1 34904 1kmvA 186 4.37e+00 c.71.1.1 72757 1mvtA 187 4.38e+00 c.71.1.1 85157 1hfq 186 4.67e+00 1aoeA c.71.1.1 34903 1dlr 186 4.69e+00 1aoeA c.71.1.1 34909 1aoeA 192 4.75e+00 1aoeA c.71.1.1 34923 1dls 186 5.58e+00 1aoeA c.71.1.1 34906 1ne9A 335 5.84e+00 1qapA 296 6.30e+00 1qpoA c.1.17.1 29559 d.41.2.1 38595 1e51A 330 6.32e+00 1b4kA c.1.10.3 59254 1pv8A 330 6.33e+00 1oemX 321 6.38e+00 c.45.1.2 86916 1v7mV 163 6.39e+00 1j58A 385 6.48e+00 b.82.1.2 71531 1q16A 1247 6.53e+00 1r27A 1246 6.75e+00 1l8gA 321 7.30e+00 c.45.1.2 73689 8dfr 189 7.73e+00 1aoeA c.71.1.1 34895 1htqA 477 7.89e+00 d.15.9.1 71035 d.128.1.1 71036 1bzcA 321 8.56e+00 1pty c.45.1.2 32670 1deqB 408 8.63e+00 i.9.1.1 45991 1glv 303 8.65e+00 1gsa c.30.1.3 31721 d.142.1.1 41480 1dmuA 299 9.96e+00 1dmuA c.52.1.4 33294 1afwA 393 1.11e+01 1afwA c.95.1.1 35900 c.95.1.1 35901 1a5y 330 1.18e+01 1pty c.45.1.2 32673 1eeoA 321 1.22e+01 1pty c.45.1.2 32655 1ptuA 321 1.24e+01 1pty c.45.1.2 32675 1jbqA 435 1.27e+01 1oasA c.79.1.1 62850 1nrfA 262 1.29e+01 1ej6A 1289 1.29e+01 i.7.1.1 45967 1gsa 316 1.30e+01 1gsa c.30.1.3 31718 d.142.1.1 41477 1o4tA 133 1.31e+01 b.82.1.9 86622 1ptvA 321 1.32e+01 1pty c.45.1.2 32665 1e7rA 321 1.48e+01 1bsvA c.2.1.2 29808 1ko3A 230 1.51e+01 1knwA 425 1.51e+01 1uuqA 440 1.58e+01 1gg4A 452 1.63e+01 1gg4A c.98.1.1 58985 c.59.1.1 33957 c.72.2.1 58986 1gp0A 143 1.76e+01 b.64.1.1 70300 1q6nA 310 1.76e+01 1pxtA 390 1.83e+01 1afwA c.95.1.1 35904 c.95.1.1 35905 1n40A 396 1.84e+01 a.104.1.1 79977 1bsvA 321 1.84e+01 1bsvA c.2.1.2 29809 1lqfA 295 1.85e+01 c.45.1.2 74187 1nwlA 298 1.86e+01 c.45.1.2 86300 1bwsA 321 1.89e+01 1bsvA c.2.1.2 29812 1nscA 390 1.90e+01 2qwc b.68.1.1 27591 1e7qA 321 1.94e+01 1bsvA c.2.1.2 29807 1g7fA 298 1.96e+01 1pty c.45.1.2 60330 1xo1A 291 1.96e+01 1exnA a.60.7.1 18086 c.120.1.2 33356 1bzjA 297 1.96e+01 1pty c.45.1.2 32667 1byqA 228 2.01e+01 1yer d.122.1.1 41100 1lc5A 364 2.08e+01 c.67.1.1 73827 1e7sA 321 2.11e+01 1bsvA c.2.1.2 29806 1noyA 388 2.21e+01 1clqA c.55.3.5 33713 1jqnA 883 2.36e+01 c.1.12.3 77159 1c83A 298 2.36e+01 1pty c.45.1.2 32660 1oe4A 247 2.45e+01 c.18.1.3 86895 1e6uA 321 2.47e+01 1bsvA c.2.1.2 29805 1c86A 298 2.51e+01 1pty c.45.1.2 32668 1hvd 319 2.54e+01 1avc a.65.1.1 18154 1nsf 273 2.54e+01 1d2nA c.37.1.20 32429 1hvf 319 2.54e+01 1avc a.65.1.1 18155 1gfyA 298 2.63e+01 1pty c.45.1.2 32666 1r8qA 181 2.63e+01 1g8aA 227 2.65e+01 1dgwY 93 2.67e+01 1caxB 1us7B 265 2.70e+01 1l8kA 314 2.73e+01 c.45.1.2 73691 1bzhA 298 2.73e+01 1pty c.45.1.2 32664 1pgl2 370 2.82e+01 1ih7A 903 2.88e+01 1clqA c.55.3.5 62375 e.8.1.1 62376 1m54A 363 2.88e+01 c.79.1.1 74463 1pa1A 310 2.88e+01 1m4oA 179 2.92e+01 b.82.1.6 78606 1hurA 180 2.98e+01 1hurA c.37.1.8 32052 1bmv2 374 3.10e+01 1bmv2 1q9yA 906 3.18e+01 1fcpA 705 3.22e+01 1by5A f.4.3.3 43805 1eu8A 409 3.24e+01 1eu8A c.94.1.1 59502 1onfA 500 3.27e+01 c.3.1.5 87141 c.3.1.5 87142 d.87.1.1 87143 1fi1A 707 3.29e+01 1by5A f.4.3.3 59844 1ut7A 171 3.32e+01 1i57A 310 3.35e+01 1pty c.45.1.2 61772 1aax 321 3.41e+01 1pty c.45.1.2 32657 1s5lD 352 3.44e+01 1r8sA 164 3.45e+01 1rxxA 421 3.46e+01 1ig9A 903 3.47e+01 1clqA c.55.3.5 62367 e.8.1.1 62368 1osfA 215 3.57e+01 d.122.1.1 87380 1jx6A 342 3.61e+01 c.93.1.1 67406 2fcpA 723 3.70e+01 1by5A f.4.3.3 43802 1dtyA 429 3.71e+01 1dtyA c.67.1.4 34495 1avhA 320 3.74e+01 1avc a.65.1.1 18159 1qfgA 725 3.76e+01 1by5A f.4.3.3 43803 1nqlA 624 3.78e+01 c.10.2.5 86033 c.10.2.5 86034 g.3.9.1 86035 g.3.9.1 86036 1by5A 714 3.82e+01 1by5A f.4.3.3 43800 1vj3A 205 3.89e+01 1dyr 206 3.90e+01 1aoeA c.71.1.1 34916 1anxA 319 3.90e+01 1avc a.65.1.1 18161 1aua 296 3.92e+01 1aua a.5.3.1 16290 c.13.1.1 30882 1hve 319 3.93e+01 1avc a.65.1.1 18156