T0217 TM1631, Thermotoga maritima
| Description | Link to file | Date |
| Inputs |
| Submitted sequence(s) | T0217.a2m | 2004 Jun 28 8:01:38 |
| README file | README | 2004 Aug 11 17:01:25 |
| Provided documentation | T0217.doc.html | 2004 Jun 28 8:14:54 |
| Multiple alignment |
| SAM_t04 multiple alignment in a2m format | T0217.t04.a2m.gz | 2004 Jun 28 9:49:39 |
| SAM_t04 multiple alignment in pretty html format | T0217.t04.pa.html | 2004 Jun 28 9:49:48 |
| SAM_t04 target hidden Markov model | T0217.t04.w0.5.mod | 2004 Jun 28 9:49:57 |
| SAM_t04 multiple alignment---sequence logo (eps format) (pdf format) | T0217.t04.w0.5-logo | 2004 Jun 28 9:50:10 |
| Script for highlighting in rasmol | conserved_t04 | 2004 Jun 28 9:50:11 |
| SAM_t2k multiple alignment in a2m format | T0217.t2k.a2m.gz | 2004 Jun 28 10:07:14 |
| SAM_t2k multiple alignment in pretty html format | T0217.t2k.pa.html | 2004 Jun 28 10:07:22 |
| SAM_t2k target hidden Markov model | T0217.t2k.w0.5.mod | 2004 Jun 28 10:07:28 |
| SAM_t2k multiple alignment---sequence logo (eps format) (pdf format) | T0217.t2k.w0.5-logo | 2004 Jun 28 10:07:36 |
| Script for highlighting in rasmol | conserved_t2k | 2004 Jun 28 10:07:36 |
| Secondary Structure Prediction (Explanation of secondary-structure predictions) |
| str2 structure prediction (rdb format) (seq format) | T0217.t2k.str2 | 2004 Jun 28 10:07:49 |
| Script for T0217.t2k.str2 coloring in rasmol | T0217.t2k.str2-color.rasmol | 2004 Jun 28 10:07:51 |
| str2---sequence logo (eps format) (pdf format) | T0217.t2k.str2-logo | 2004 Jun 28 10:07:57 |
| stride-ebghtl structure prediction (rdb format) (seq format) | T0217.t2k.stride-ebghtl | 2004 Jun 28 10:07:32 |
| Script for T0217.t2k.stride-ebghtl coloring in rasmol | T0217.t2k.stride-ebghtl-color.rasmol | 2004 Jun 28 10:07:58 |
| stride-ebghtl---sequence logo (eps format) (pdf format) | T0217.t2k.stride-ebghtl-logo | 2004 Jun 28 10:08:05 |
| dssp-ebghstl structure prediction (rdb format) (seq format) | T0217.t2k.dssp-ebghstl | 2004 Jun 28 10:08:09 |
| Script for T0217.t2k.dssp-ebghstl coloring in rasmol | T0217.t2k.dssp-ebghstl-color.rasmol | 2004 Jun 28 10:08:10 |
| dssp-ebghstl---sequence logo (eps format) (pdf format) | T0217.t2k.dssp-ebghstl-logo | 2004 Jun 28 10:08:16 |
| alpha structure prediction (rdb format) (seq format) | T0217.t2k.alpha | 2004 Jun 28 10:08:19 |
| Script for T0217.t2k.alpha coloring in rasmol | T0217.t2k.alpha-color.rasmol | 2004 Jun 28 10:08:20 |
| alpha---sequence logo (eps format) (pdf format) | T0217.t2k.alpha-logo | 2004 Jun 28 10:08:26 |
| bys structure prediction (rdb format) (seq format) | T0217.t2k.bys | 2004 Jun 28 10:08:29 |
| Script for T0217.t2k.bys coloring in rasmol | T0217.t2k.bys-color.rasmol | 2004 Jun 28 10:08:31 |
| bys---sequence logo (eps format) (pdf format) | T0217.t2k.bys-logo | 2004 Jul 16 15:00:15 |
| dssp-ehl2 structure prediction (rdb format) (seq format) | T0217.t2k.dssp-ehl2 | 2004 Jun 28 10:08:33 |
| Script for T0217.t2k.dssp-ehl2 coloring in rasmol | T0217.t2k.dssp-ehl2-color.rasmol | 2004 Jun 28 10:08:35 |
| dssp-ehl2---sequence logo (eps format) (pdf format) | T0217.t2k.dssp-ehl2-logo | 2004 Jun 28 10:08:40 |
| CB_burial_14_7 structure prediction (rdb format) (seq format) | T0217.t2k.CB_burial_14_7 | 2004 Jun 28 10:08:45 |
| Script for T0217.t2k.CB_burial_14_7 coloring in rasmol | T0217.t2k.CB_burial_14_7-color.rasmol | 2004 Jun 28 10:08:46 |
| CB_burial_14_7---sequence logo (eps format) (pdf format) | T0217.t2k.CB_burial_14_7-logo | 2004 Jun 28 10:08:53 |
| near-backbone-11 structure prediction (rdb format) (seq format) | T0217.t2k.near-backbone-11 | 2004 Jul 5 22:12:20 |
| Script for T0217.t2k.near-backbone-11 coloring in rasmol | T0217.t2k.near-backbone-11-color.rasmol | 2004 Jul 5 22:12:20 |
| near-backbone-11---sequence logo (eps format) (pdf format) | T0217.t2k.near-backbone-11-logo | 2004 Aug 7 11:14:58 |
| str2 structure prediction (rdb format) (seq format) | T0217.t04.str2 | 2004 Jun 28 10:08:59 |
| Script for T0217.t04.str2 coloring in rasmol | T0217.t04.str2-color.rasmol | 2004 Jun 28 10:09:01 |
| str2---sequence logo (eps format) (pdf format) | T0217.t04.str2-logo | 2004 Jun 28 10:09:05 |
| stride-ebghtl structure prediction (rdb format) (seq format) | T0217.t04.stride-ebghtl | 2004 Jun 28 9:50:05 |
| Script for T0217.t04.stride-ebghtl coloring in rasmol | T0217.t04.stride-ebghtl-color.rasmol | 2004 Jun 28 10:09:07 |
| stride-ebghtl---sequence logo (eps format) (pdf format) | T0217.t04.stride-ebghtl-logo | 2004 Jun 28 10:09:16 |
| dssp-ebghstl structure prediction (rdb format) (seq format) | T0217.t04.dssp-ebghstl | 2004 Jun 28 10:09:24 |
| Script for T0217.t04.dssp-ebghstl coloring in rasmol | T0217.t04.dssp-ebghstl-color.rasmol | 2004 Jun 28 10:09:25 |
| dssp-ebghstl---sequence logo (eps format) (pdf format) | T0217.t04.dssp-ebghstl-logo | 2004 Jun 28 10:09:29 |
| alpha structure prediction (rdb format) (seq format) | T0217.t04.alpha | 2004 Jun 28 10:09:39 |
| Script for T0217.t04.alpha coloring in rasmol | T0217.t04.alpha-color.rasmol | 2004 Jun 28 10:09:41 |
| alpha---sequence logo (eps format) (pdf format) | T0217.t04.alpha-logo | 2004 Jun 28 10:09:45 |
| bys structure prediction (rdb format) (seq format) | T0217.t04.bys | 2004 Jun 28 10:09:56 |
| Script for T0217.t04.bys coloring in rasmol | T0217.t04.bys-color.rasmol | 2004 Jun 28 10:09:57 |
| bys---sequence logo (eps format) (pdf format) | T0217.t04.bys-logo | 2004 Jul 16 15:00:48 |
| dssp-ehl2 structure prediction (rdb format) (seq format) | T0217.t04.dssp-ehl2 | 2004 Jun 28 10:09:59 |
| Script for T0217.t04.dssp-ehl2 coloring in rasmol | T0217.t04.dssp-ehl2-color.rasmol | 2004 Jun 28 10:10:02 |
| dssp-ehl2---sequence logo (eps format) (pdf format) | T0217.t04.dssp-ehl2-logo | 2004 Jun 28 10:10:09 |
| CB_burial_14_7 structure prediction (rdb format) (seq format) | T0217.t04.CB_burial_14_7 | 2004 Jun 28 10:10:19 |
| Script for T0217.t04.CB_burial_14_7 coloring in rasmol | T0217.t04.CB_burial_14_7-color.rasmol | 2004 Jun 28 10:10:20 |
| CB_burial_14_7---sequence logo (eps format) (pdf format) | T0217.t04.CB_burial_14_7-logo | 2004 Jun 28 10:10:24 |
| Target model scores |
| near-backbone-11 structure prediction (rdb format) (seq format) | T0217.t04.near-backbone-11 | 2004 Jul 5 22:12:36 |
| amino acid single-track target model scores of PDB | T0217.t2k-w0.5-scores.html | 2004 Jun 28 10:17:21 |
| Script for T0217.t04.near-backbone-11 coloring in rasmol | T0217.t04.near-backbone-11-color.rasmol | 2004 Jul 5 22:12:37 |
| near-backbone-11---sequence logo (eps format) (pdf format) | T0217.t04.near-backbone-11-logo | 2004 Aug 7 11:15:03 |
| amino acid single-track target model scores of PDB | T0217.t04-w0.5-scores.html | 2004 Jun 28 10:22:32 |
| amino acid/100-30-str2 two-track target model scores | T0217.t2k-100-30-str2-scores.html | 2004 Jun 28 10:30:07 |
| amino acid/100-30-stride-ebghtl two-track target model scores | T0217.t2k-100-30-stride-ebghtl-scores.html | 2004 Jun 28 10:37:28 |
| amino acid/100-30-dssp-ebghstl two-track target model scores | T0217.t2k-100-30-dssp-ebghstl-scores.html | 2004 Jun 28 10:44:58 |
| amino acid/100-30-alpha two-track target model scores | T0217.t2k-100-30-alpha-scores.html | 2004 Jun 28 10:52:27 |
| amino acid/100-30-bys two-track target model scores | T0217.t2k-100-30-bys-scores.html | 2004 Jul 16 15:06:45 |
| amino acid/100-30-dssp-ehl2 two-track target model scores | T0217.t2k-100-30-dssp-ehl2-scores.html | 2004 Jun 28 11:00:25 |
| amino acid/100-30-CB_burial_14_7 two-track target model scores | T0217.t2k-100-30-CB_burial_14_7-scores.html | 2004 Jun 28 11:07:41 |
| amino acid/100-30-near-backbone-11 two-track target model scores | T0217.t2k-100-30-near-backbone-11-scores.html | 2004 Aug 7 11:17:33 |
| amino acid/100-40-40-str2+CB_burial_14_7 two-track target model scores | T0217.t2k-100-40-40-str2+CB_burial_14_7-scores.html | 2004 Jul 16 15:11:58 |
| amino acid/100-30-str2 two-track target model scores | T0217.t04-100-30-str2-scores.html | 2004 Jun 28 11:20:54 |
| amino acid/100-30-stride-ebghtl two-track target model scores | T0217.t04-100-30-stride-ebghtl-scores.html | 2004 Jun 28 11:25:49 |
| amino acid/100-30-dssp-ebghstl two-track target model scores | T0217.t04-100-30-dssp-ebghstl-scores.html | 2004 Jun 28 11:30:53 |
| amino acid/100-30-alpha two-track target model scores | T0217.t04-100-30-alpha-scores.html | 2004 Jun 28 11:35:51 |
| amino acid/100-30-bys two-track target model scores | T0217.t04-100-30-bys-scores.html | 2004 Jul 16 15:15:24 |
| amino acid/100-30-dssp-ehl2 two-track target model scores | T0217.t04-100-30-dssp-ehl2-scores.html | 2004 Jun 28 11:40:47 |
| amino acid/100-30-CB_burial_14_7 two-track target model scores | T0217.t04-100-30-CB_burial_14_7-scores.html | 2004 Jun 28 11:45:49 |
| amino acid/100-30-near-backbone-11 two-track target model scores | T0217.t04-100-30-near-backbone-11-scores.html | 2004 Aug 7 11:19:17 |
| amino acid/100-40-40-str2+CB_burial_14_7 two-track target model scores | T0217.t04-100-40-40-str2+CB_burial_14_7-scores.html | 2004 Jul 16 15:18:56 |
| Template model scores |
| Annotated template model scores | T0217.template-lib-scores.html | 2004 Jun 28 11:59:10 |
| Top Hits |
| Best scoring hits from all models | T0217.t2k.best-scores.html | 2004 Jul 16 15:19:00 |
| Alignments for Top Hits |
| T02 Many Alignments Summary | T0217.t2k.many_alignments.html | 2004 Aug 11 17:17:26 |
| T02 Top Models Summary | T0217.t2k.top_reported_alignments.html | 2004 Aug 11 17:17:27 |
| multiple alignment of templates (a2m.gz format) (pa format) | all-align | 2004 Aug 11 17:18:01 |
| Undertaker (3d) files |
| Undertaker input for top alignments | T0217.t2k.undertaker-align.under | 2004 Aug 11 17:18:50 |
| Fragment list for undertaker (from fragfinder) | T0217.t04.many.frag.gz | 2004 Aug 7 13:30:24 |
| Fragment list for undertaker (from fragfinder) | T0217.t2k.many.frag.gz | 2004 Jun 28 12:31:59 |