CreatePredAlphaCost pred_alpha2k alpha11 T0215.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0215.t04.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 10 near_backbone 3 way_back 3 dry5 10 dry6.5 20 dry8 10 dry12 5 \ phobic_fit 2 \ sidechain 6 \ bystroff 5 \ soft_clashes 40 backbone_clashes 2 \ break 100 \ pred_alpha2k 5 \ pred_alpha04 5 \ constraints 2 \ hbond_geom 2 \ hbond_geom_backbone 1 # hbond_geom_beta 0.4 \ # hbond_geom_beta_pair 1 # extend the HIS tag StrandConstraint H5 H10 6.0