a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0215 TA0354_69_121, T. acidophilum
- gi|16081483|ref|NP_393833.1|_68:121 hypothetical membrane protein [Thermoplasma acidophilum DSM 1728]
- gi|10639526|emb|CAC11498.1| hypothetical membrane protein [Thermoplasma acidophilum]
- gi|48477686|ref|YP_023392.1|_70:122 hypothetical membrane associated protein [Picrophilus torridus DSM 9790]
- gi|48430334|gb|AAT43199.1| hypothetical membrane associated protein [Picrophilus torridus DSM 9790]
- gi|13541247|ref|NP_110935.1|_69:121 Predicted membrane protein [Thermoplasma volcanium GSS1]
- gi|14324632|dbj|BAB59559.1| TVG0404408 [Thermoplasma volcanium GSS1]

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MGTSHHHHHHSSGRENLYFQGHMRNLSDRAKFESMINSPSKSVFVRNLNELEALAVRLGKSYRIQ
   2 ----------------------VRNLSDRAKFESMINSPSKSVFVRNLNELEALAVRLGKSYRIQ
   3 -----------------------SGIKDTIDFNRYIGSESKKMFMEHLTELERISKRFDGSYEER
   4 -----------------------ANLRDTSRFESLINSSSKSVFVRNLDELERLAKKLGKGYLIQ


         70      
         |      
   1 LDQAKEKWKVK
   2 LDQAKEKWKVK
   3 LEEAKKKWKLK
   4 LENAKEKWKVK