# List of top-scoring protein chains for T0215.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nc7A 138 2.07e-06 b.123.1.1 85549 1rcuA 195 5.17e-06 1p9qC 256 1.03e-05 1t2aA 375 1.57e-05 1k7kA 221 2.75e-05 c.51.4.1 72104 1pbtA 244 4.36e-05 1njkA 156 4.88e-05 d.38.1.1 85818 1p8cA 145 5.43e-05 1kr4A 125 5.35e-04 d.58.5.2 72889 1lqlA 166 4.96e-02 1m32A 366 6.37e-02 c.67.1.3 78508 1n0eA 166 8.52e-02 1l2fA 369 8.59e-02 1mgpA 313 1.20e-01 c.119.1.1 79098 1hx1A 400 1.44e-01 1ba1 c.55.1.1 61348 c.55.1.1 61349 1nyeA 162 2.81e-01 1nrhX 472 2.93e-01 1nxjA 183 3.40e-01 c.8.7.1 86382 1jpeA 151 4.29e-01 b.1.17.1 77146 1o59A 355 4.75e-01 1soxA 466 4.91e-01 1soxA b.1.18.6 21947 d.120.1.1 41090 d.176.1.1 42563 1skoA 143 4.98e-01 1toaA 313 6.90e-01 1toaA c.92.2.2 35598 1fnoA 417 7.15e-01 c.56.5.4 75841 d.58.19.1 70145 1v8pA 158 7.42e-01 1v8oA 158 7.56e-01 1uumA 372 9.06e-01 1upiA 225 1.06e+00 1q7tA 328 1.07e+00 3gcb 470 1.14e+00 3gcb d.3.1.1 37032 1a6r 471 1.14e+00 3gcb d.3.1.1 37033 1bgq 225 1.31e+00 1yer d.122.1.1 41098 1mqbA 333 1.47e+00 1p99A 295 1.48e+00 1vjnA 220 1.59e+00 1sdjA 310 1.74e+00 1d9sA 136 1.93e+00 1bd8 i.11.1.1 46013 1c9eA 306 2.20e+00 1ak1 c.92.1.1 35595 1dozA 309 2.24e+00 1ak1 c.92.1.1 35592 1c1hA 310 2.25e+00 1ak1 c.92.1.1 35593 1bi7B 156 2.34e+00 1bd8 d.211.1.1 19166 1a5e 156 2.35e+00 1bd8 d.211.1.1 19169 1v64A 108 2.68e+00 1ufhA 180 3.03e+00 d.108.1.1 88485 1gkuB 1054 3.46e+00 c.37.1.16 65257 c.37.1.16 65258 e.10.1.1 65259 1gl9B 1054 3.48e+00 c.37.1.16 65291 c.37.1.16 65292 e.10.1.1 65293 1h4yA 117 3.63e+00 1auz c.13.2.1 60628 1rdr 461 3.95e+00 1rdr e.8.1.4 43116 3adk 195 4.14e+00 1zin c.37.1.1 31885 1fv3A 472 4.26e+00 b.29.1.6 60038 b.42.4.2 60039 1lm6A 215 4.43e+00 d.167.1.1 84628 1h4xA 117 4.53e+00 1auz c.13.2.1 60626 1kqrA 179 4.82e+00 b.29.1.14 72886 1cfyA 143 4.83e+00 1cof d.109.1.2 40858 1vimA 200 4.99e+00 1ry2A 663 6.19e+00 1sfsA 240 6.64e+00 1q7rA 219 6.80e+00 1i4wA 353 6.85e+00 c.66.1.24 66028 1hl2A 297 7.02e+00 c.1.10.1 83581 1qzqA 483 7.39e+00 1r30A 369 7.94e+00 1syrA 112 8.33e+00 1bbhA 131 8.70e+00 1bbhA a.24.3.2 16546 1ec5A 49 8.76e+00 1ec5A k.8.1.1 46421 1i1nA 226 1.11e+01 c.66.1.7 71102 2hntE 81 1.16e+01 1ucyH 1g99A 408 1.40e+01 1g99A c.55.1.2 33457 c.55.1.2 33458 1unnC 115 1.42e+01 1sf9A 128 1.42e+01 1vixA 420 1.43e+01 1afoA 40 1.50e+01 1afoA j.35.1.1 46257 1je3A 97 1.55e+01 d.68.3.3 71637 1qrrA 394 1.57e+01 1qrrA c.2.1.2 29824 1gh9A 71 1.78e+01 1gh9A g.41.6.1 45266 1o6yA 299 1.83e+01 d.144.1.7 81106 1jc7A 131 1.86e+01 1jc7A b.40.3.2 62873 1jb3A 131 1.87e+01 1jc7A b.40.3.2 62833 1ow5A 85 1.93e+01 1rtwA 220 1.96e+01 1o5wA 534 1.97e+01 1nkwY 73 2.03e+01 i.1.1.2 80609 1dhn 121 2.05e+01 1dhn d.96.1.3 40663 1hkuA 358 2.07e+01 c.2.1.4 83557 c.23.12.1 83558 1hy3A 294 2.08e+01 c.37.1.5 71090 1k8kF 168 2.17e+01 d.198.2.1 68312 1ofuA 320 2.19e+01 c.32.1.1 86972 d.79.2.1 86973 1npdA 288 2.31e+01 c.2.1.7 80681 c.58.1.5 80682 1outA 143 2.32e+01 1abwA a.1.1.2 15400 1jeyA 609 2.62e+01 1jeqA e.31.1.1 62924 1aa2 108 2.63e+01 1bkrA a.40.1.1 17395 1c3rA 375 2.65e+01 1c3pA c.42.1.2 32607 1jb9A 316 2.65e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 1c3pA 375 2.66e+01 1c3pA c.42.1.2 32606 1jm7B 117 2.67e+01 g.44.1.1 66881 1bkrA 109 2.68e+01 1bkrA a.40.1.1 17394 1itwA 741 2.71e+01 c.77.1.2 76793 1eybA 471 2.79e+01 1ey2A b.82.1.4 28115 1p87B 240 2.83e+01 i.1.1.1 87922 1cunA 213 2.91e+01 1cunA a.7.1.1 16313 a.7.1.1 16314 1hj7A 80 3.03e+01 1emn g.3.11.1 61071 g.3.11.1 61072 1ri9A 102 3.05e+01 1hz8A 82 3.08e+01 1i0uA g.3.11.1 61432 g.3.11.1 61433 2lbd 267 3.13e+01 2lbd a.123.1.1 19287 1nal1 297 3.15e+01 1nal3 1fdyA 297 3.16e+01 1nal3 c.1.10.1 29071 3crd 100 3.17e+01 3crd a.77.1.3 18429 1ac0 108 3.28e+01 1kum b.3.1.1 22526 1c2yA 156 3.41e+01 1rvv1 c.16.1.1 30972 3bct 470 3.42e+01 3bct a.118.1.1 19112 2a2uA 181 3.51e+01 1mup b.60.1.1 27135 1nekB 238 3.54e+01 a.1.2.1 80429 d.15.4.2 80430 1j57A 143 3.55e+01 d.221.1.1 77079 1lujA 514 3.59e+01 a.118.1.1 78225 2bct 516 3.60e+01 3bct a.118.1.1 19113 1jdhA 529 3.73e+01 a.118.1.1 66549 1g3jA 532 3.75e+01 3bct a.118.1.1 19114 1i7wA 538 3.75e+01 3bct a.118.1.1 61909 1s2dA 166 3.75e+01 1qz7A 533 3.75e+01 1jpwA 540 3.77e+01 a.118.1.1 67059 1i3uA 126 3.78e+01 1gc1H b.1.1.1 61636 1ijxA 127 3.88e+01 1ijxA a.141.1.1 62511 1i3vA 129 3.92e+01 1gc1H b.1.1.1 61637 1aquA 297 3.94e+01 1aquA c.37.1.5 31942 1a4h 230 3.94e+01 1yer d.122.1.1 41099 1ihbA 162 3.99e+01 1bd8 d.211.1.1 19161