# List of top-scoring protein chains for t2k-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jb9A 316 2.61e-01 1fnc b.43.4.2 62840 c.25.1.1 62841 1dpb 243 4.97e-01 1eaf c.43.1.1 32618 1rboC 123 5.71e-01 1rboC d.73.1.1 39634 8rucI 123 6.82e-01 1rboC d.73.1.1 39629 1pc6A 146 7.87e-01 1gk8I 140 9.88e-01 d.73.1.1 65242 1eaf 243 9.92e-01 1eaf c.43.1.1 32617 1d9cA 121 1.19e+00 1d9cA a.26.1.3 16901 4aahB 69 1.44e+00 4aahB a.137.2.1 19625 1jbgA 109 1.68e+00 a.6.1.3 66480 2nllB 103 1.74e+00 2nllB g.39.1.2 45115 1qzpA 68 2.24e+00 1fnoA 417 2.29e+00 c.56.5.4 75841 d.58.19.1 70145 2abd 86 2.34e+00 1aca a.11.1.1 16366 1ngmB 72 2.56e+00 j.104.1.1 85687 1exbA 332 2.93e+00 1qrqA c.1.7.1 28666 1qcrG 70 3.08e+00 1be3G f.23.13.1 43677 1l4aD 87 3.39e+00 h.1.15.1 73562 1ggwA 140 3.71e+00 1ggwA a.39.1.5 60490 1aca 86 3.72e+00 1aca a.11.1.1 16367 1e7lA 157 3.81e+00 1en7A a.140.4.1 64728 d.4.1.5 64729 2ezk 99 4.49e+00 2ezk a.4.1.2 16027 1qrqA 325 5.02e+00 1qrqA c.1.7.1 28667 1k04A 162 5.21e+00 a.24.14.1 67904 1ioj 57 5.61e+00 1ioj j.39.1.1 46293 1g7sA 594 5.97e+00 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 2cpgA 45 6.20e+00 2cpgA a.43.1.2 17455 1p32C 209 6.21e+00 1p32A d.25.1.1 38381 1mv8A 436 6.46e+00 a.100.1.4 85128 c.2.1.6 85129 c.26.3.1 85130 1p32A 209 6.53e+00 1p32A d.25.1.1 38379 1ezvG 93 6.64e+00 1ezvG f.23.13.1 59551 1i3jA 116 6.98e+00 1i3jA e.30.1.1 61594 1d9nA 75 7.65e+00 1d9nA d.10.1.3 37486 1ntcA 91 7.66e+00 1ntcA a.105.1.1 19004 1vhzA 198 7.72e+00 1xpa 122 7.75e+00 1xpa a.6.1.2 16308 g.39.1.5 45151 1kx5B 102 7.92e+00 a.22.1.1 77594 1ocrC 261 8.79e+00 1ocrC f.25.1.1 43540 1bhjA 292 8.87e+00 1xvaA c.66.1.5 34189 2occH 85 8.90e+00 2occH a.51.1.1 17796 1jyoE 105 8.91e+00 d.184.1.2 67487 1gr2A 279 9.73e+00 1gr2A c.94.1.1 35825 1afoA 40 9.75e+00 1afoA j.35.1.1 46257 1unnC 115 9.84e+00 1om4A 422 1.03e+01 d.174.1.1 87067 1du6A 64 1.09e+01 1akhA a.4.1.1 16002 1hb6A 86 1.12e+01 a.11.1.1 70959 1f6fA 199 1.16e+01 1f6fA a.26.1.1 16839 1pufA 77 1.18e+01 1v5sA 126 1.18e+01 2occC 261 1.21e+01 1ocrC f.25.1.1 43520 1i4mA 108 1.21e+01 d.6.1.1 66025 1ireB 228 1.21e+01 b.34.4.4 76770 1p94A 76 1.25e+01 1dw0A 112 1.26e+01 1dw0A a.3.1.1 15911 1g7rA 594 1.26e+01 1g7rA b.43.3.1 25716 b.43.3.1 25717 c.20.1.1 31034 c.37.1.8 32149 1rw2A 152 1.32e+01 1lvhA 221 1.33e+01 c.108.1.6 74282 1dgrW 93 1.34e+01 1caxB 1g7tA 594 1.35e+01 1g7rA b.43.3.1 25714 b.43.3.1 25715 c.20.1.1 31033 c.37.1.8 32148 1h0cA 392 1.35e+01 c.67.1.3 83424 1b24A 188 1.40e+01 1b24A d.95.2.1 40573 d.95.2.1 40574 1msc 129 1.44e+01 1msc d.85.1.1 40039 1v54H 85 1.46e+01 1ois 223 1.47e+01 1a36A e.15.1.1 43267 1ithA 141 1.56e+01 1ithA a.1.1.2 15623 1uu1A 335 1.58e+01 1llmC 88 1.59e+01 1en7A 157 1.60e+01 1en7A a.140.4.1 64733 d.4.1.5 64734 1d2gA 292 1.64e+01 1xvaA c.66.1.5 34187 1qwzA 235 1.66e+01 1hulA 108 1.68e+01 1hulA a.26.1.2 16865 1g2qA 187 1.69e+01 c.61.1.1 65117 1dgrM 93 1.73e+01 1caxB b.82.1.2 28101 1k52A 72 1.74e+01 d.15.7.1 68148 1j3kA 280 1.81e+01 c.71.1.1 84070 1cg7A 93 1.82e+01 1cktA a.21.1.1 16428 1jeyA 609 1.82e+01 1jeqA e.31.1.1 62924 1k8wA 327 1.87e+01 b.122.1.1 83094 d.58.35.2 68317 d.58.35.2 83095 1m45A 148 1.90e+01 a.39.1.5 78598 1dq3A 454 1.93e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1us7B 265 1.93e+01 1jqjC 343 1.94e+01 a.80.1.1 67097 c.37.1.20 67098 1ftkA 279 1.97e+01 1gr2A c.94.1.1 35819 1f3vA 179 2.02e+01 1f3vA d.58.22.1 39382 1h6pA 203 2.07e+01 a.146.1.1 60690 1lis 136 2.10e+01 1lis a.19.1.1 16406 1fnc 314 2.15e+01 1fnc b.43.4.2 25627 c.25.1.1 31517 1fnd 314 2.15e+01 1fnc b.43.4.2 25626 c.25.1.1 31516 1fx3B 169 2.17e+01 1fx3B d.33.1.1 38525 1owxA 121 2.18e+01 d.58.7.1 87494 2ezl 99 2.19e+01 2ezk a.4.1.2 16026 1qcrD 75 2.21e+01 1qcrD a.3.1.3 15956 f.23.11.1 43674 1v54C 261 2.22e+01 1kx5D 125 2.22e+01 a.22.1.1 77596 1kx5A 135 2.29e+01 a.22.1.1 77593 1c3yA 108 2.39e+01 1c3yA a.39.2.1 17387 1vixA 420 2.42e+01 1p9vA 310 2.58e+01 d.21.1.2 88007 d.21.1.2 88008 1sdjA 310 2.58e+01 1xvaA 292 2.60e+01 1xvaA c.66.1.5 34183 1vib 55 2.61e+01 1vib g.2.2.1 43999 1mfqC 129 2.72e+01 a.36.1.1 79046 1qyaA 307 2.74e+01 1a1z 91 2.82e+01 1a1z a.77.1.4 18427 1eq1A 166 2.83e+01 a.63.1.1 64910 1jm4B 118 2.86e+01 a.29.2.1 71746 1h6qA 168 2.88e+01 1h6qA b.88.1.2 60692 2spcA 107 2.94e+01 2spcA a.7.1.1 16311 1g73A 162 2.95e+01 1fewA a.7.4.1 16332 1hdlA 55 3.00e+01 g.57.1.1 65808 1fr0A 125 3.04e+01 2a0b a.24.10.1 59996 1c5lL 36 3.05e+01 1ppbL b.47.1.2 26078 1kb9H 93 3.07e+01 f.23.13.1 77323 2lisA 136 3.24e+01 1lis a.19.1.1 16405 1irqA 71 3.35e+01 a.43.1.2 66297 2cy3 118 3.36e+01 3cyr a.138.1.1 19649 1ba1 386 3.41e+01 1ba1 c.55.1.1 33387 c.55.1.1 33388 1fnb 314 3.42e+01 1fnc b.43.4.2 25628 c.25.1.1 31518 1oe9A 795 3.43e+01 1h99A 224 3.45e+01 a.142.1.1 60814 a.142.1.1 60815 1uk5A 111 3.60e+01 1umqA 81 3.64e+01 1bdc 60 3.66e+01 1fc2C a.8.1.1 16350 1kte 105 3.67e+01 1kte c.47.1.1 32771 1mqdA 261 3.87e+01 c.94.1.1 85049 1a7w 69 3.87e+01 1a7w a.22.1.2 16477 1sfcD 87 3.95e+01 1sfcD h.1.15.1 45646 1iqsA 88 3.96e+01 d.214.1.1 71278