# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oq9A 363 5.36e-01 a.25.1.2 87257 1bbhA 131 6.17e-01 1bbhA a.24.3.2 16546 3adk 195 9.94e-01 1zin c.37.1.1 31885 1afrA 345 1.13e+00 1afrA a.25.1.2 16805 1jb9A 316 1.61e+00 1fnc b.43.4.2 62840 c.25.1.1 62841 1exbA 332 2.38e+00 1qrqA c.1.7.1 28666 1qrqA 325 2.41e+00 1qrqA c.1.7.1 28667 1p49A 562 2.41e+00 1unnC 115 2.70e+00 1us7B 265 3.19e+00 1ec5A 50 3.27e+00 1ec5A k.8.1.1 46421 1i1nA 226 3.92e+00 c.66.1.7 71102 1kr5A 226 3.92e+00 c.66.1.7 68847 3crd 100 4.43e+00 3crd a.77.1.3 18429 1cunA 213 4.48e+00 1cunA a.7.1.1 16313 a.7.1.1 16314 1m32A 366 4.69e+00 c.67.1.3 78508 1ezvG 93 5.49e+00 1ezvG f.23.13.1 59551 1hy3A 294 6.29e+00 c.37.1.5 71090 1kb9H 93 6.58e+00 f.23.13.1 77323 1gnwA 211 6.77e+00 1gnwA a.45.1.1 17727 c.47.1.5 33021 1k7kA 221 7.97e+00 c.51.4.1 72104 1lvhA 221 9.80e+00 c.108.1.6 74282 1h38C 883 1.07e+01 e.8.1.3 76627 1h38D 883 1.08e+01 e.8.1.3 76628 1a0cA 438 1.10e+01 1a0cA c.1.15.3 29529 1mswD 883 1.13e+01 e.8.1.3 79427 1h38B 883 1.15e+01 e.8.1.3 76626 1aquA 297 1.16e+01 1aquA c.37.1.5 31942 2cpgA 45 1.22e+01 2cpgA a.43.1.2 17455 1ew4A 106 1.24e+01 1ew4A d.82.2.1 40023 1jb3A 131 1.36e+01 1jc7A b.40.3.2 62833 1v5sA 126 1.50e+01 1ufoA 238 1.56e+01 1pq1B 33 1.66e+01 1jm0A 50 1.68e+01 k.8.1.1 66870 1a3gA 308 1.79e+01 1daaA e.17.1.1 43286 1rboC 123 1.81e+01 1rboC d.73.1.1 39634 1hl2A 297 1.82e+01 c.1.10.1 83581 1vhzA 198 1.92e+01 1bdg 451 1.96e+01 1qhaA c.55.1.3 33461 c.55.1.3 33462 8rucI 123 1.99e+01 1rboC d.73.1.1 39629 1ukz 203 2.05e+01 1zin c.37.1.1 31840 1acz 108 2.06e+01 1kum b.3.1.1 22524 1qbkB 890 2.12e+01 1qbkB a.118.1.1 19127 1g3mA 294 2.17e+01 c.37.1.5 83268 1jeqA 609 2.19e+01 1jeqA a.140.2.1 64748 e.31.1.1 64749 1g2qA 187 2.19e+01 c.61.1.1 65117 1p9vA 310 2.23e+01 d.21.1.2 88007 d.21.1.2 88008 1sdjA 310 2.23e+01 1o26A 232 2.26e+01 d.207.1.1 86566 1axdA 209 2.27e+01 1gnwA a.45.1.1 17730 c.47.1.5 33024 1p1lA 102 2.30e+01 d.58.5.2 87695 1kq4A 232 2.59e+01 d.207.1.1 68791 1ur3M 319 2.61e+01 1og6A 298 2.65e+01 c.1.7.1 86984 1jeyA 609 2.68e+01 1jeqA e.31.1.1 62924 1o08A 221 2.73e+01 c.108.1.6 86525 1bksB 397 2.76e+01 2tysB c.79.1.1 35285 1uaaA 673 2.77e+01 1pjr c.37.1.19 32401 c.37.1.19 32402 1ae7 119 2.82e+01 1poa a.133.1.2 19553 6prcM 323 3.03e+01 6prcM f.26.1.1 43435 3nodB 423 3.11e+01 1nseA d.174.1.1 42513 1dhn 121 3.15e+01 1dhn d.96.1.3 40663 1ijxA 127 3.21e+01 1ijxA a.141.1.1 62511 1qrrA 394 3.44e+01 1qrrA c.2.1.2 29824 1xo1A 291 3.46e+01 1exnA a.60.7.1 18086 c.120.1.2 33356 1i24A 404 3.48e+01 c.2.1.2 83663 1iyeA 309 3.52e+01 e.17.1.1 83786 1d3uB 201 3.61e+01 1aisB a.74.1.2 18386 a.74.1.2 18387 1i1kA 309 3.67e+01 1daaA e.17.1.1 61533 1kum 108 3.82e+01 1kum b.3.1.1 22525 1qpsA 261 3.83e+01 1ckqA c.52.1.1 33234 1qyaA 307 3.87e+01 1aps 98 3.94e+01 2acy d.58.10.1 39299 1jnyA 435 4.00e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984