# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3adk 195 7.39e-01 1zin c.37.1.1 31885 1jb9A 316 1.56e+00 1fnc b.43.4.2 62840 c.25.1.1 62841 1i1nA 226 2.14e+00 c.66.1.7 71102 1k7kA 221 2.43e+00 c.51.4.1 72104 1kr5A 226 2.81e+00 c.66.1.7 68847 1m32A 366 3.17e+00 c.67.1.3 78508 1unnC 115 3.25e+00 1qrqA 325 3.43e+00 1qrqA c.1.7.1 28667 1us7B 265 3.77e+00 1bbhA 131 4.01e+00 1bbhA a.24.3.2 16546 1lvhA 221 4.59e+00 c.108.1.6 74282 1ukz 203 5.20e+00 1zin c.37.1.1 31840 1gpb 842 5.51e+00 1a8i c.87.1.4 35478 1exbA 332 5.62e+00 1qrqA c.1.7.1 28666 1c8kA 842 5.76e+00 1a8i c.87.1.4 35491 1a8i 842 5.86e+00 1a8i c.87.1.4 35490 1gnwA 211 6.08e+00 1gnwA a.45.1.1 17727 c.47.1.5 33021 1fnoA 417 6.17e+00 c.56.5.4 75841 d.58.19.1 70145 1qrrA 394 6.54e+00 1qrrA c.2.1.2 29824 1qpsA 261 6.63e+00 1ckqA c.52.1.1 33234 1i24A 404 6.67e+00 c.2.1.2 83663 1h5uA 842 6.78e+00 1a8i c.87.1.4 60655 1ec5A 50 7.10e+00 1ec5A k.8.1.1 46421 1o59A 355 7.30e+00 1hl2A 297 7.85e+00 c.1.10.1 83581 1oq9A 363 8.65e+00 a.25.1.2 87257 1cunA 213 8.83e+00 1cunA a.7.1.1 16313 a.7.1.1 16314 1rboC 123 8.84e+00 1rboC d.73.1.1 39634 8rucI 123 8.84e+00 1rboC d.73.1.1 39629 1o08A 221 8.94e+00 c.108.1.6 86525 1e7lA 157 9.34e+00 1en7A a.140.4.1 64728 d.4.1.5 64729 1jb3A 131 1.04e+01 1jc7A b.40.3.2 62833 1d3uB 201 1.13e+01 1aisB a.74.1.2 18386 a.74.1.2 18387 2cpgA 45 1.13e+01 2cpgA a.43.1.2 17455 1vi9A 299 1.14e+01 1v64A 108 1.19e+01 1afrA 345 1.23e+01 1afrA a.25.1.2 16805 1nal1 297 1.30e+01 1nal3 1itwA 741 1.46e+01 c.77.1.2 76793 1heiA 451 1.51e+01 1heiA c.37.1.14 32463 c.37.1.14 32464 1nal3 297 1.70e+01 1nal3 1uaaA 673 1.73e+01 1pjr c.37.1.19 32401 c.37.1.19 32402 1aisB 200 1.75e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 8ohm 435 1.80e+01 1heiA c.37.1.14 32469 c.37.1.14 32470 1mpgA 282 1.84e+01 1mpgA a.96.1.3 18747 d.129.1.2 41296 1rtwA 220 1.85e+01 1v5sA 126 1.97e+01 1eriA 276 2.01e+01 1ckqA c.52.1.1 33231 1qbkB 890 2.09e+01 1qbkB a.118.1.1 19127 1cl8A 276 2.16e+01 1ckqA c.52.1.1 33230 1ckqA 276 2.17e+01 1ckqA c.52.1.1 33229 1fdyA 297 2.17e+01 1nal3 c.1.10.1 29071 1p9vA 310 2.19e+01 d.21.1.2 88007 d.21.1.2 88008 1sdjA 310 2.19e+01 1a0cA 438 2.24e+01 1a0cA c.1.15.3 29529 1bdg 451 2.29e+01 1qhaA c.55.1.3 33461 c.55.1.3 33462 1h38D 883 2.34e+01 e.8.1.3 76628 1h38C 883 2.35e+01 e.8.1.3 76627 1vixA 420 2.42e+01 1h38B 883 2.50e+01 e.8.1.3 76626 1aa2 108 2.64e+01 1bkrA a.40.1.1 17395 3crd 100 2.69e+01 3crd a.77.1.3 18429 1nr3A 122 2.70e+01 d.236.1.1 86092 1ac0 108 2.74e+01 1kum b.3.1.1 22526 1ei5A 520 2.75e+01 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1afoA 40 2.83e+01 1afoA j.35.1.1 46257 1gz2A 142 2.91e+01 d.169.1.1 83392 1p1lA 102 2.98e+01 d.58.5.2 87695 1dcnA 424 3.07e+01 1auwA a.127.1.1 19420 1jeyA 609 3.09e+01 1jeqA e.31.1.1 62924 1jm0A 50 3.10e+01 k.8.1.1 66870 1acz 108 3.18e+01 1kum b.3.1.1 22524 1hy3A 294 3.27e+01 c.37.1.5 71090 1hkvA 453 3.29e+01 b.49.2.3 83559 c.1.6.1 83560 1jeqA 609 3.32e+01 1jeqA a.140.2.1 64748 e.31.1.1 64749 6prcM 323 3.36e+01 6prcM f.26.1.1 43435 1q77A 138 3.40e+01 1qc9A 276 3.46e+01 1ckqA c.52.1.1 33235 1dxrM 323 3.53e+01 6prcM f.26.1.1 43432 3bct 457 3.57e+01 3bct a.118.1.1 19112 1g2qA 187 3.58e+01 c.61.1.1 65117 1gkuB 1054 3.62e+01 c.37.1.16 65257 c.37.1.16 65258 e.10.1.1 65259 1og6A 298 3.75e+01 c.1.7.1 86984 1ur3M 319 3.78e+01 1axdA 209 3.90e+01 1gnwA a.45.1.1 17730 c.47.1.5 33024 1pq1B 33 3.91e+01