# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bbhA 131 1.66e-01 1bbhA a.24.3.2 16546 3adk 195 2.42e-01 1zin c.37.1.1 31885 1qrqA 325 4.41e-01 1qrqA c.1.7.1 28667 1exbA 332 4.88e-01 1qrqA c.1.7.1 28666 1gnwA 211 6.32e-01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1hl2A 297 8.04e-01 c.1.10.1 83581 1kr5A 226 1.02e+00 c.66.1.7 68847 1i1nA 226 1.03e+00 c.66.1.7 71102 1jb9A 316 1.33e+00 1fnc b.43.4.2 62840 c.25.1.1 62841 1rboC 123 1.41e+00 1rboC d.73.1.1 39634 8rucI 123 1.81e+00 1rboC d.73.1.1 39629 1unnC 115 2.11e+00 1jb3A 131 2.97e+00 1jc7A b.40.3.2 62833 1ukz 203 3.06e+00 1zin c.37.1.1 31840 2cpgA 45 3.11e+00 2cpgA a.43.1.2 17455 1oq9A 363 3.50e+00 a.25.1.2 87257 1nal1 297 3.51e+00 1nal3 1afrA 345 3.96e+00 1afrA a.25.1.2 16805 1lvhA 221 4.04e+00 c.108.1.6 74282 1us7B 265 4.61e+00 1dxrM 323 5.03e+00 6prcM f.26.1.1 43432 6prcM 323 5.05e+00 6prcM f.26.1.1 43435 1nal3 297 5.10e+00 1nal3 1m32A 366 5.34e+00 c.67.1.3 78508 1fdyA 297 5.52e+00 1nal3 c.1.10.1 29071 1d3uB 201 5.94e+00 1aisB a.74.1.2 18386 a.74.1.2 18387 1kum 108 6.14e+00 1kum b.3.1.1 22525 1ec5A 50 6.42e+00 1ec5A k.8.1.1 46421 1e7lA 157 6.88e+00 1en7A a.140.4.1 64728 d.4.1.5 64729 1o08A 221 7.59e+00 c.108.1.6 86525 1gpb 842 7.76e+00 1a8i c.87.1.4 35478 1a8i 842 7.88e+00 1a8i c.87.1.4 35490 1bdg 451 8.17e+00 1qhaA c.55.1.3 33461 c.55.1.3 33462 1aa2 108 8.31e+00 1bkrA a.40.1.1 17395 1c8kA 842 8.32e+00 1a8i c.87.1.4 35491 1cunA 213 8.59e+00 1cunA a.7.1.1 16313 a.7.1.1 16314 8ohm 435 9.01e+00 1heiA c.37.1.14 32469 c.37.1.14 32470 1bkrA 109 9.42e+00 1bkrA a.40.1.1 17394 1heiA 451 9.53e+00 1heiA c.37.1.14 32463 c.37.1.14 32464 1ur3M 319 9.54e+00 1k7kA 221 1.00e+01 c.51.4.1 72104 1qrrA 394 1.00e+01 1qrrA c.2.1.2 29824 1p1lA 102 1.01e+01 d.58.5.2 87695 1i24A 404 1.02e+01 c.2.1.2 83663 1h5uA 842 1.04e+01 1a8i c.87.1.4 60655 1o59A 355 1.04e+01 1og6A 298 1.14e+01 c.1.7.1 86984 1uaaA 673 1.17e+01 1pjr c.37.1.19 32401 c.37.1.19 32402 1vk0A 206 1.21e+01 1a0cA 438 1.37e+01 1a0cA c.1.15.3 29529 1h8lA 380 1.38e+01 b.3.2.1 65737 c.56.5.1 65738 1rtwA 220 1.46e+01 1acz 108 1.46e+01 1kum b.3.1.1 22524 1q77A 138 1.48e+01 3minC 491 1.63e+01 1qguA c.92.2.3 35607 1gxjA 186 1.67e+01 d.215.1.1 70707 1mpgA 282 1.68e+01 1mpgA a.96.1.3 18747 d.129.1.2 41296 1qyaA 307 1.75e+01 1v5sA 126 1.76e+01 1gxlA 213 1.88e+01 d.215.1.1 70713 1hkvA 453 1.92e+01 b.49.2.3 83559 c.1.6.1 83560 1hdlA 55 1.92e+01 g.57.1.1 65808 1g13A 162 1.95e+01 1g13A b.95.1.1 60194 1aisB 200 1.96e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 1qpsA 261 1.98e+01 1ckqA c.52.1.1 33234 1ac0 108 2.03e+01 1kum b.3.1.1 22526 1qbkB 890 2.14e+01 1qbkB a.118.1.1 19127 1vi9A 299 2.23e+01 1ehiA 377 2.26e+01 1iow c.30.1.2 31716 d.142.1.1 41484 1eb6A 177 2.32e+01 d.92.1.12 64895 1pq1B 33 2.37e+01 1d9nA 75 2.39e+01 1d9nA d.10.1.3 37486 1hy3A 294 2.39e+01 c.37.1.5 71090 1p9vA 310 2.61e+01 d.21.1.2 88007 d.21.1.2 88008 1sdjA 310 2.61e+01 1gk8I 140 2.66e+01 d.73.1.1 65242 1ei5A 520 2.71e+01 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 2wsyB 396 2.75e+01 2tysB c.79.1.1 35288 1qmuA 380 2.80e+01 1qmuA b.3.2.1 22534 c.56.5.1 33827 1fnoA 417 2.85e+01 c.56.5.4 75841 d.58.19.1 70145 1mj5A 302 2.93e+01 1ufoA 238 2.99e+01 1iz7A 295 3.09e+01 c.69.1.8 76982 1jm0A 50 3.23e+01 k.8.1.1 66870 4pgaA 337 3.35e+01 4pgaA c.88.1.1 35565 1ae7 119 3.40e+01 1poa a.133.1.2 19553 1nr3A 122 3.41e+01 d.236.1.1 86092 1gz2A 142 3.45e+01 d.169.1.1 83392 1sviA 195 3.48e+01 1cv2A 296 3.57e+01 1bn6A c.69.1.8 34680 1qfjA 232 3.62e+01 1qfjA b.43.4.2 25655 c.25.1.1 31545 1gr2A 279 3.65e+01 1gr2A c.94.1.1 35825 1m6jA 261 3.71e+01 c.1.1.1 78693 1g2hA 61 3.75e+01 1g2hA a.4.1.10 60224 1reqB 637 3.78e+01 1reqB c.1.19.1 29621 c.23.6.1 31248 2tysB 397 3.79e+01 2tysB c.79.1.1 35272 3bct 457 3.88e+01 3bct a.118.1.1 19112 1ijxA 127 3.92e+01 1ijxA a.141.1.1 62511 1eqcA 394 3.93e+01 1cz1A c.1.8.3 28811 1cz1A 394 3.93e+01 1cz1A c.1.8.3 28839