# List of top-scoring protein chains for t2k-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qrqA 325 2.87e-01 1qrqA c.1.7.1 28667 1m32A 366 3.01e-01 c.67.1.3 78508 1exbA 332 3.38e-01 1qrqA c.1.7.1 28666 1fnoA 417 3.48e-01 c.56.5.4 75841 d.58.19.1 70145 1jb9A 316 5.11e-01 1fnc b.43.4.2 62840 c.25.1.1 62841 1hl2A 297 6.95e-01 c.1.10.1 83581 1a8i 842 7.42e-01 1a8i c.87.1.4 35490 1k7kA 221 7.58e-01 c.51.4.1 72104 1bbhA 131 1.02e+00 1bbhA a.24.3.2 16546 1vixA 420 1.44e+00 1gnwA 211 1.72e+00 1gnwA a.45.1.1 17727 c.47.1.5 33021 1c8kA 842 1.72e+00 1a8i c.87.1.4 35491 1h5uA 842 2.32e+00 1a8i c.87.1.4 60655 1gpb 842 2.53e+00 1a8i c.87.1.4 35478 1nal3 297 3.42e+00 1nal3 3minC 491 3.50e+00 1qguA c.92.2.3 35607 1unnC 115 3.95e+00 1fdyA 297 4.17e+00 1nal3 c.1.10.1 29071 1cunA 213 4.44e+00 1cunA a.7.1.1 16313 a.7.1.1 16314 1gkuB 1054 4.47e+00 c.37.1.16 65257 c.37.1.16 65258 e.10.1.1 65259 1nal1 297 4.61e+00 1nal3 2cpgA 45 4.92e+00 2cpgA a.43.1.2 17455 8rucI 123 5.31e+00 1rboC d.73.1.1 39629 1rtwA 220 5.50e+00 1p9vA 310 5.58e+00 d.21.1.2 88007 d.21.1.2 88008 1sdjA 310 5.58e+00 1i1nA 226 5.67e+00 c.66.1.7 71102 3adk 195 6.33e+00 1zin c.37.1.1 31885 1us7B 265 6.46e+00 1fp4A 492 6.60e+00 c.92.2.3 76187 1rboC 123 6.81e+00 1rboC d.73.1.1 39634 1m1nA 491 7.30e+00 c.92.2.3 78417 3bct 457 7.49e+00 3bct a.118.1.1 19112 1g3jA 532 7.72e+00 3bct a.118.1.1 19114 1mpgA 282 7.79e+00 1mpgA a.96.1.3 18747 d.129.1.2 41296 1jdhA 529 7.82e+00 a.118.1.1 66549 1afrA 345 8.44e+00 1afrA a.25.1.2 16805 2minA 491 9.16e+00 1qguA c.92.2.3 35609 1uaaA 673 9.21e+00 1pjr c.37.1.19 32401 c.37.1.19 32402 1gz2A 142 9.30e+00 d.169.1.1 83392 1oq9A 363 9.46e+00 a.25.1.2 87257 1i7wA 538 9.52e+00 3bct a.118.1.1 61909 1ec5A 50 9.57e+00 1ec5A k.8.1.1 46421 1jc7A 131 1.00e+01 1jc7A b.40.3.2 62873 1kr5A 226 1.11e+01 c.66.1.7 68847 1g13A 162 1.39e+01 1g13A b.95.1.1 60194 1a0cA 438 1.42e+01 1a0cA c.1.15.3 29529 1jb3A 131 1.47e+01 1jc7A b.40.3.2 62833 1v5sA 126 1.47e+01 1kb9H 93 1.49e+01 f.23.13.1 77323 3thiA 371 1.62e+01 2thiA c.94.1.1 35792 1aa2 108 1.63e+01 1bkrA a.40.1.1 17395 1p1lA 102 1.68e+01 d.58.5.2 87695 1iv8A 720 1.76e+01 b.71.1.1 76842 c.1.8.1 76843 1qbkB 890 1.85e+01 1qbkB a.118.1.1 19127 1pq1B 33 1.89e+01 1ijxA 127 1.90e+01 1ijxA a.141.1.1 62511 1bkrA 109 1.98e+01 1bkrA a.40.1.1 17394 1is2A 661 1.98e+01 a.29.3.2 71382 a.29.3.2 71383 e.6.1.2 71384 1d3uB 201 1.99e+01 1aisB a.74.1.2 18386 a.74.1.2 18387 1aj3 110 1.99e+01 1cunA a.7.1.1 16319 1vk0A 206 2.06e+01 1q77A 138 2.09e+01 1eciB 34 2.17e+01 1eciA a.33.1.1 17000 1acz 108 2.22e+01 1kum b.3.1.1 22524 1h0hB 214 2.25e+01 d.58.1.5 76437 1fr0A 125 2.28e+01 2a0b a.24.10.1 59996 1o59A 355 2.38e+01 1o5zA 442 2.38e+01 1dquA 538 2.38e+01 1dquA c.1.12.7 29314 1jplA 171 2.45e+01 a.118.9.2 67027 1hy3A 294 2.47e+01 c.37.1.5 71090 1a6jA 163 2.66e+01 1a6jA d.112.1.1 40915 1dxrM 323 2.67e+01 6prcM f.26.1.1 43432 1pn1A 176 2.68e+01 1s0pA 176 2.68e+01 1htqA 477 2.70e+01 d.15.9.1 71035 d.128.1.1 71036 2thiA 379 2.71e+01 2thiA c.94.1.1 35794 1aisB 200 2.85e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 1jnyA 435 2.86e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1aop 497 2.94e+01 2aop d.58.36.1 39501 d.58.36.1 39502 d.134.1.1 41425 d.134.1.1 41426 1evyA 366 2.98e+01 1evyA a.100.1.6 18811 c.2.1.6 30215 1e7lA 157 3.02e+01 1en7A a.140.4.1 64728 d.4.1.5 64729 1i1rB 181 3.08e+01 1i1rB a.26.1.1 61548 2tysB 397 3.20e+01 2tysB c.79.1.1 35272 1lq7A 67 3.43e+01 k.9.1.1 74183 1g2qA 187 3.44e+01 c.61.1.1 65117 1gkfB 557 3.52e+01 2wsyB 396 3.54e+01 2tysB c.79.1.1 35288 1j5uA 136 3.55e+01 d.208.1.1 71584 1mv8A 436 3.55e+01 a.100.1.4 85128 c.2.1.6 85129 c.26.3.1 85130 1bksB 397 3.73e+01 2tysB c.79.1.1 35285 1gm9B 557 3.78e+01 1m6jA 261 3.82e+01 c.1.1.1 78693 1kq4A 232 3.82e+01 d.207.1.1 68791 2mhr 118 3.83e+01 2mhr a.24.4.1 16581 1qyaA 307 3.85e+01 1eq1A 166 3.91e+01 a.63.1.1 64910 1cz1A 394 3.92e+01 1cz1A c.1.8.3 28839 6prcM 323 3.96e+01 6prcM f.26.1.1 43435 1gk9B 557 3.98e+01