# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fnoA 417 1.95e-02 c.56.5.4 75841 d.58.19.1 70145 1vixA 420 6.45e-02 1jeyA 609 2.98e-01 1jeqA e.31.1.1 62924 2hntE 81 4.66e-01 1ucyH 1v64A 108 5.12e-01 1jeqA 609 5.41e-01 1jeqA a.140.2.1 64748 e.31.1.1 64749 1p9vA 310 5.66e-01 d.21.1.2 88007 d.21.1.2 88008 1sdjA 310 5.66e-01 1jb9A 316 8.80e-01 1fnc b.43.4.2 62840 c.25.1.1 62841 1k7kA 221 1.47e+00 c.51.4.1 72104 1je3A 97 1.63e+00 d.68.3.3 71637 1fp0A 88 1.80e+00 1fp0A g.50.1.2 45361 1lenA 181 2.02e+00 1led b.29.1.1 24032 1rboC 123 2.22e+00 1rboC d.73.1.1 39634 8rucI 123 2.24e+00 1rboC d.73.1.1 39629 2if1 126 2.27e+00 2if1 d.64.1.1 39547 1afoA 40 2.81e+00 1afoA j.35.1.1 46257 1vimA 200 3.59e+00 1exbA 332 3.65e+00 1qrqA c.1.7.1 28666 1qrqA 325 3.89e+00 1qrqA c.1.7.1 28667 1l4aD 87 4.11e+00 h.1.15.1 73562 1hy3A 294 4.30e+00 c.37.1.5 71090 1hh2P 344 5.00e+00 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 3kinB 117 5.17e+00 3kinB 1pufA 77 5.27e+00 1unnC 115 5.40e+00 1dq3A 454 5.51e+00 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 2kinB 100 5.52e+00 3kinB 1i4mA 108 5.80e+00 d.6.1.1 66025 1dw0A 112 6.79e+00 1dw0A a.3.1.1 15911 2ltnA 181 6.82e+00 1led b.29.1.1 24024 1f7sA 139 7.60e+00 1cof d.109.1.2 40857 1ec5A 50 7.65e+00 1ec5A k.8.1.1 46421 1k52A 72 8.78e+00 d.15.7.1 68148 1v5sA 126 9.14e+00 1pfsA 78 1.06e+01 1pfsA b.40.4.7 25391 1ezvG 93 1.20e+01 1ezvG f.23.13.1 59551 1kb9H 93 1.20e+01 f.23.13.1 77323 1r8oB 71 1.21e+01 1ioj 57 1.26e+01 1ioj j.39.1.1 46293 1a1z 91 1.32e+01 1a1z a.77.1.4 18427 1kvnA 104 1.44e+01 d.201.1.1 73066 1i0uA 82 1.45e+01 1i0uA g.3.11.1 61493 g.3.11.1 61494 1s98A 107 1.48e+01 1jaxA 212 1.54e+01 c.2.1.6 66476 1jayA 212 1.59e+01 c.2.1.6 66478 1r4xA 275 1.64e+01 2spcA 107 1.64e+01 2spcA a.7.1.1 16311 1d9nA 75 1.68e+01 1d9nA d.10.1.3 37486 1mv8A 436 1.81e+01 a.100.1.4 85128 c.2.1.6 85129 c.26.3.1 85130 1k51A 72 1.81e+01 d.15.7.1 68147 1gk8I 140 1.88e+01 d.73.1.1 65242 1a1w 91 1.96e+01 1a1z a.77.1.4 18425 1rtwA 220 1.97e+01 1h6hA 143 2.04e+01 d.189.1.1 65681 1aquA 297 2.06e+01 1aquA c.37.1.5 31942 1j8uA 325 2.07e+01 d.178.1.1 71611 1q77A 138 2.08e+01 1jy2N 53 2.09e+01 h.1.8.1 67440 1s5dA 240 2.16e+01 1ocrC 261 2.29e+01 1ocrC f.25.1.1 43540 3crd 100 2.30e+01 3crd a.77.1.3 18429 1qm3A 112 2.47e+01 1b10A d.6.1.1 37313 1fu1B 203 2.49e+01 1fu1B b.59.1.1 27077 h.1.11.1 45631 1g3mA 294 2.50e+01 c.37.1.5 83268 1r72A 211 2.57e+01 1jm4B 118 2.60e+01 a.29.2.1 71746 1r13A 148 2.68e+01 1rfbA 119 2.74e+01 1d9cA a.26.1.3 16905 1qryA 80 2.75e+01 2hddA a.4.1.1 16016 1m1nA 491 2.80e+01 c.92.2.3 78417 1n45A 233 3.00e+01 a.132.1.1 79981 1e7lA 157 3.07e+01 1en7A a.140.4.1 64728 d.4.1.5 64729 1jm0A 50 3.10e+01 k.8.1.1 66870 2occC 261 3.14e+01 1ocrC f.25.1.1 43520 1rhi3 236 3.20e+01 1aym3 1aym3 238 3.35e+01 1aym3 1us7B 265 3.38e+01 4pah 308 3.38e+01 4pah d.178.1.1 42576 1v54C 261 3.38e+01 1ngmB 72 3.42e+01 j.104.1.1 85687 2minA 491 3.47e+01 1qguA c.92.2.3 35609 1dpb 243 3.47e+01 1eaf c.43.1.1 32618 1jrhI 108 3.50e+01 1jrhI b.1.2.1 22059 1pah 308 3.53e+01 4pah d.178.1.1 42578 1j57A 143 3.54e+01 d.221.1.1 77079 1i3uA 127 3.58e+01 1gc1H b.1.1.1 61636 1fp4A 492 3.62e+01 c.92.2.3 76187 3minC 491 3.63e+01 1qguA c.92.2.3 35607 1czj 111 3.67e+01 3cyr a.138.1.1 19663 1qm1A 143 3.70e+01 1b10A d.6.1.1 37312 1mhxA 65 3.77e+01 d.15.7.1 79134 1r6fA 310 3.93e+01