a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0215 TA0354_69_121, T. acidophilum
- gi|16081483|ref|NP_393833.1|_45:121 hypothetical membrane protein [Thermoplasma acidophilum DSM 1728]
- gi|10639526|emb|CAC11498.1| hypothetical membrane protein [Thermoplasma acidophilum]
- gi|13541247|ref|NP_110935.1|_45:121 Predicted membrane protein [Thermoplasma volcanium GSS1]
- gi|14324632|dbj|BAB59559.1| TVG0404408 [Thermoplasma volcanium GSS1]
- gi|48477686|ref|YP_023392.1|_46:122 hypothetical membrane associated protein [Picrophilus torridus DSM 9790]
- gi|48430334|gb|AAT43199.1| hypothetical membrane associated protein [Picrophilus torridus DSM 9790]

                 10         20          30        40        50        6
                 |          |           |         |         |         
   1 ...MGTSHHHHHHSSGRENLY.FQGHM.R.NLSDRAKFESMINSPSKSVFVRNLNELEALAVRLG
   2 afdVGNWVYWIFAVSFIFTIT.MAYLMvR.NLSDRAKFESMINSPSKSVFVRNLNELEALAVRLG
   3 qfnVGDWVYWIFAVSFIAAIM.FGYSM.WaNLRDTSRFESLINSSSKSVFVRNLDELERLAKKLG
   4 hivIGRYYYYLFAVSLIFLIYgLYESY.S.GIKDTIDFNRYIGSESKKMFMEHLTELERISKRFD


      0        70          
     |         |          
   1 KSYRIQLDQAKEKWKVK....
   2 KSYRIQLDQAKEKWKVK....
   3 KGYLIQLENAKEKWKVK....
   4 GSYEERLEEAKKKWKLKslk.