# List of top-scoring protein chains for T0215.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nc7A 138 1.74e-03 b.123.1.1 85549 1rcuA 195 3.35e-03 1p9qC 256 9.17e-03 1k7kA 221 2.40e-02 c.51.4.1 72104 1njkA 156 4.04e-02 d.38.1.1 85818 1t2aA 375 4.25e-02 1pbtA 244 6.23e-02 1p8cA 145 6.43e-02 1kr4A 125 8.15e-02 d.58.5.2 72889 1m32A 366 2.07e-01 c.67.1.3 78508 1soxA 466 1.03e+00 1soxA b.1.18.6 21947 d.120.1.1 41090 d.176.1.1 42563 1vjnA 220 1.41e+00 1gkuB 1054 2.60e+00 c.37.1.16 65257 c.37.1.16 65258 e.10.1.1 65259 1gl9B 1054 2.64e+00 c.37.1.16 65291 c.37.1.16 65292 e.10.1.1 65293 1v64A 108 2.99e+00 1a5e 156 3.02e+00 1bd8 d.211.1.1 19169 1bi7B 156 3.05e+00 1bd8 d.211.1.1 19166 1d9sA 136 3.70e+00 1bd8 i.11.1.1 46013 1upiA 225 3.72e+00 1o59A 355 3.85e+00 1g99A 408 4.20e+00 1g99A c.55.1.2 33457 c.55.1.2 33458 1i8tA 367 5.27e+00 c.4.1.3 66094 d.16.1.7 66095 1cfyA 143 6.23e+00 1cof d.109.1.2 40858 1fnoA 417 8.98e+00 c.56.5.4 75841 d.58.19.1 70145 1rtwA 220 9.96e+00 1hl2A 297 9.96e+00 c.1.10.1 83581 1lm6A 215 1.00e+01 d.167.1.1 84628 1nkwY 73 1.01e+01 i.1.1.2 80609 1q27A 171 1.37e+01 1k8kF 168 1.53e+01 d.198.2.1 68312 1c9eA 306 1.55e+01 1ak1 c.92.1.1 35595 1dozA 309 1.57e+01 1ak1 c.92.1.1 35592 1c1hA 310 1.57e+01 1ak1 c.92.1.1 35593 1jrhI 108 1.58e+01 1jrhI b.1.2.1 22059 1s2dA 166 1.58e+01 1ec5A 49 1.60e+01 1ec5A k.8.1.1 46421 1c2yA 156 1.61e+01 1rvv1 c.16.1.1 30972 1itwA 741 1.71e+01 c.77.1.2 76793 1o6yA 299 1.83e+01 d.144.1.7 81106 1hy3A 294 1.84e+01 c.37.1.5 71090 1nxjA 183 1.86e+01 c.8.7.1 86382 3adk 195 1.91e+01 1zin c.37.1.1 31885 1n0eA 166 2.02e+01 6prcL 273 2.09e+01 6prcL f.26.1.1 43434 1sg3A 349 2.26e+01 1lqlA 166 2.26e+01 1h4yA 117 2.32e+01 1auz c.13.2.1 60628 1fv3A 472 2.39e+01 b.29.1.6 60038 b.42.4.2 60039 1c3rA 375 2.44e+01 1c3pA c.42.1.2 32607 1cunA 213 2.48e+01 1cunA a.7.1.1 16313 a.7.1.1 16314 1c3pA 375 2.50e+01 1c3pA c.42.1.2 32606 1c1kA 217 2.51e+01 1c1kA a.120.1.1 19239 1iuz 98 2.52e+01 1plc b.6.1.1 22861 1dxrL 273 2.59e+01 6prcL f.26.1.1 43431 1dhn 121 2.61e+01 1dhn d.96.1.3 40663 1l2fA 369 2.74e+01 1hj7A 80 2.79e+01 1emn g.3.11.1 61071 g.3.11.1 61072 1je3A 97 2.80e+01 d.68.3.3 71637 1hz8A 82 2.82e+01 1i0uA g.3.11.1 61432 g.3.11.1 61433 2if1 126 2.82e+01 2if1 d.64.1.1 39547 1mfqC 129 2.97e+01 a.36.1.1 79046 1jb9A 316 3.16e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 1aquA 297 3.20e+01 1aquA c.37.1.5 31942 1fdyA 297 3.21e+01 1nal3 c.1.10.1 29071 1dxrM 323 3.22e+01 6prcM f.26.1.1 43432 1nal1 297 3.23e+01 1nal3 7pcy 98 3.26e+01 1plc b.6.1.1 22863 1jc7A 131 3.28e+01 1jc7A b.40.3.2 62873 1jb3A 131 3.32e+01 1jc7A b.40.3.2 62833 1h4xA 117 3.41e+01 1auz c.13.2.1 60626 1uhpA 107 3.47e+01 1uaaA 673 3.57e+01 1pjr c.37.1.19 32401 c.37.1.19 32402 1fc0A 846 3.66e+01 1a8i c.87.1.4 35473 1l5sA 847 3.66e+01 c.87.1.4 77716 1q2zA 120 3.69e+01 1i60A 278 3.70e+01 c.1.15.4 71118 1i3uA 126 3.76e+01 1gc1H b.1.1.1 61636 1unnC 115 3.81e+01 1fu0A 87 3.87e+01 1ptf d.94.1.1 40550 1ptf 88 3.91e+01 1ptf d.94.1.1 40549 1qfrA 89 3.93e+01 1ptf d.94.1.1 40552 1i3vA 129 3.95e+01 1gc1H b.1.1.1 61637 1gh9A 71 3.96e+01 1gh9A g.41.6.1 45266