# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jb9A	316	1.53e+00	1fnc	b.43.4.2	62840
				c.25.1.1	62841
1dq3A	454	2.16e+00	1dq3A	b.86.1.2	28380
				d.50.3.1	38798
				d.95.2.2	40585
				d.95.2.2	40586
1unnC	115	2.55e+00			
1mv8A	436	2.72e+00		a.100.1.4	85128
				c.2.1.6	85129
				c.26.3.1	85130
1nfvA	179	5.04e+00		a.25.1.1	85642
7pcy	98	5.81e+00	1plc	b.6.1.1	22863
1eljA	381	5.81e+00	4mbp	c.94.1.1	35791
1nlnA	204	6.18e+00			
1iuz	98	6.99e+00	1plc	b.6.1.1	22861
1exbA	332	7.66e+00	1qrqA	c.1.7.1	28666
2cpgA	45	7.94e+00	2cpgA	a.43.1.2	17455
1qb2A	109	8.43e+00	1qb2A	a.36.1.1	17125
1hg4A	279	1.01e+01	1lbd	a.123.1.1	19333
1avpA	204	1.13e+01	1avpA	d.3.1.7	37132
1h4lD	147	1.35e+01		a.74.1.1	70873
1e8aA	91	1.54e+01	1b4cA	a.39.1.2	17188
1m4rA	151	1.56e+01		a.26.1.3	84799
1v0dA	329	1.64e+01			
1m45A	148	1.74e+01		a.39.1.5	78598
1h0hB	214	1.87e+01		d.58.1.5	76437
1ko6A	187	1.98e+01		b.119.1.1	77471
1j58A	385	2.00e+01		b.82.1.2	71531
1pzlA	237	2.12e+01			
1lis	136	2.40e+01	1lis	a.19.1.1	16406
1qyaA	307	2.41e+01			
1p4wA	99	2.48e+01		a.4.6.2	87783
1pa7A	130	2.52e+01			
2lisA	136	2.55e+01	1lis	a.19.1.1	16405
1s9uA	207	2.61e+01			
1k1fA	72	2.66e+01		a.147.1.1	68007
1g2nA	264	2.69e+01	1lbd	a.123.1.1	60227
1hdlA	55	2.73e+01		g.57.1.1	65808
1ithA	141	2.79e+01	1ithA	a.1.1.2	15623
1ec5A	50	2.84e+01	1ec5A	k.8.1.1	46421
1sdjA	310	2.85e+01			
1fl1A	230	3.10e+01	1at3A	b.57.1.1	27023
5csmA	256	3.11e+01	5csmA	a.130.1.2	19494
1rtwA	220	3.18e+01			
1axdA	209	3.22e+01	1gnwA	a.45.1.1	17730
				c.47.1.5	33024
1sfe	180	3.25e+01	1sfe	a.4.2.1	16073
				c.55.7.1	33748
1on2A	142	3.25e+01		a.4.5.24	87103
				a.76.1.1	87104
1lc0A	294	3.34e+01		c.2.1.3	73823
				d.81.1.4	73824
1mvcA	240	3.51e+01		a.123.1.1	79499
1q59A	172	3.57e+01			
1j55A	95	3.68e+01		a.39.1.2	77078
1kxlA	199	3.69e+01		b.40.4.3	73155
1kpf	126	3.77e+01	1kpf	d.13.1.1	37507
1k8wA	327	3.77e+01		b.122.1.1	83094
				d.58.35.2	68317
				d.58.35.2	83095
2occE	109	3.98e+01	2occE	a.118.11.1	19224