# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jb9A 316 6.72e-01 1fnc b.43.4.2 62840 c.25.1.1 62841 1us7B 265 1.15e+00 1exbA 332 1.45e+00 1qrqA c.1.7.1 28666 1unnC 115 1.56e+00 1gnwA 211 2.73e+00 1gnwA a.45.1.1 17727 c.47.1.5 33021 1a0cA 438 3.00e+00 1a0cA c.1.15.3 29529 2cpgA 45 3.35e+00 2cpgA a.43.1.2 17455 1oq9A 363 3.69e+00 a.25.1.2 87257 1o08A 221 3.75e+00 c.108.1.6 86525 1afrA 345 4.33e+00 1afrA a.25.1.2 16805 1cunA 213 4.81e+00 1cunA a.7.1.1 16313 a.7.1.1 16314 1ec5A 50 5.34e+00 1ec5A k.8.1.1 46421 1hl2A 297 5.47e+00 c.1.10.1 83581 1o59A 355 6.22e+00 1dxrM 323 6.37e+00 6prcM f.26.1.1 43432 1bbhA 131 6.48e+00 1bbhA a.24.3.2 16546 1heiA 451 7.87e+00 1heiA c.37.1.14 32463 c.37.1.14 32464 1m32A 366 8.03e+00 c.67.1.3 78508 1qb2A 109 8.04e+00 1qb2A a.36.1.1 17125 7pcy 98 9.47e+00 1plc b.6.1.1 22863 1ib8A 164 1.05e+01 b.38.2.1 71168 d.52.4.1 71169 1qbkB 890 1.11e+01 1qbkB a.118.1.1 19127 1h0hB 214 1.20e+01 d.58.1.5 76437 1nal1 297 1.24e+01 1nal3 1gxjA 186 1.40e+01 d.215.1.1 70707 1mv8A 436 1.41e+01 a.100.1.4 85128 c.2.1.6 85129 c.26.3.1 85130 1eb6A 177 1.60e+01 d.92.1.12 64895 1ufoA 238 1.63e+01 1g2qA 187 1.63e+01 c.61.1.1 65117 1aquA 297 1.81e+01 1aquA c.37.1.5 31942 1iuz 98 1.82e+01 1plc b.6.1.1 22861 1lfjA 119 1.85e+01 a.133.1.2 84604 1ae7 119 1.91e+01 1poa a.133.1.2 19553 1eljA 381 2.00e+01 4mbp c.94.1.1 35791 1pq1B 33 2.00e+01 1jb3A 131 2.12e+01 1jc7A b.40.3.2 62833 1fvzA 271 2.15e+01 1fvzA d.129.3.4 60050 1hwxA 501 2.18e+01 1hwyA c.2.1.7 30250 c.58.1.1 33898 1dvpA 220 2.19e+01 1dvpA a.118.9.2 19216 g.50.1.1 45358 1p9eA 331 2.27e+01 1axdA 209 2.32e+01 1gnwA a.45.1.1 17730 c.47.1.5 33024 1qyaA 307 2.43e+01 1jm0A 50 2.44e+01 k.8.1.1 66870 1sdjA 310 2.54e+01 1p1lA 102 2.65e+01 d.58.5.2 87695 1mr1C 99 2.77e+01 d.217.1.2 79420 1poa 118 2.79e+01 1poa a.133.1.2 19514 1fm9D 272 2.88e+01 2prgA a.123.1.1 19313 1akz 223 3.05e+01 3eugA c.18.1.1 31007 1mpgA 282 3.08e+01 1mpgA a.96.1.3 18747 d.129.1.2 41296 1iv8A 720 3.19e+01 b.71.1.1 76842 c.1.8.1 76843 1pi1A 185 3.29e+01 1s6bA 119 3.43e+01 2a0b 125 3.48e+01 2a0b a.24.10.1 16630 1s6bB 119 3.49e+01 1t3lA 337 3.55e+01 1lj2A 110 3.57e+01 h.1.13.2 73926 1ew4A 106 3.62e+01 1ew4A d.82.2.1 40023 1dhn 121 3.79e+01 1dhn d.96.1.3 40663 1hn4A 131 3.80e+01 a.133.1.2 65893 1ur3M 319 3.90e+01 1a8i 842 3.90e+01 1a8i c.87.1.4 35490 1i1nA 226 3.92e+01 c.66.1.7 71102