# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jb9A	316	2.35e+00	1fnc	b.43.4.2	62840
				c.25.1.1	62841
1us7B	265	2.88e+00			
1a8i	842	5.33e+00	1a8i	c.87.1.4	35490
1unnC	115	5.46e+00			
1exbA	332	6.08e+00	1qrqA	c.1.7.1	28666
1h5uA	842	6.38e+00	1a8i	c.87.1.4	60655
1cunA	213	8.43e+00	1cunA	a.7.1.1	16313
				a.7.1.1	16314
1a0cA	438	1.00e+01	1a0cA	c.1.15.3	29529
1ec5A	50	1.06e+01	1ec5A	k.8.1.1	46421
1o08A	221	1.08e+01		c.108.1.6	86525
1m32A	366	1.09e+01		c.67.1.3	78508
1hl2A	297	1.12e+01		c.1.10.1	83581
1o59A	355	1.16e+01			
1itwA	741	1.17e+01		c.77.1.2	76793
1dxrM	323	1.22e+01	6prcM	f.26.1.1	43432
1eljA	381	1.36e+01	4mbp	c.94.1.1	35791
1i1nA	226	1.48e+01		c.66.1.7	71102
1oq9A	363	1.50e+01		a.25.1.2	87257
2cpgA	45	1.59e+01	2cpgA	a.43.1.2	17455
1gnwA	211	1.62e+01	1gnwA	a.45.1.1	17727
				c.47.1.5	33021
2ctc	307	1.66e+01	1aye	c.56.5.1	33802
1rtwA	220	1.78e+01			
1qbkB	890	1.93e+01	1qbkB	a.118.1.1	19127
1v64A	108	2.05e+01			
1nal1	297	2.11e+01	1nal3		
1afrA	345	2.23e+01	1afrA	a.25.1.2	16805
1heiA	451	2.24e+01	1heiA	c.37.1.14	32463
				c.37.1.14	32464
1bbhA	131	2.40e+01	1bbhA	a.24.3.2	16546
7pcy	98	2.55e+01	1plc	b.6.1.1	22863
1ib8A	164	2.72e+01		b.38.2.1	71168
				d.52.4.1	71169
1iuz	98	2.76e+01	1plc	b.6.1.1	22861
1h2kA	349	2.83e+01		b.82.2.6	76572
1fvzA	271	2.89e+01	1fvzA	d.129.3.4	60050
1p9eA	331	3.27e+01			
1jm0A	50	3.77e+01		k.8.1.1	66870
1mr1C	99	3.92e+01		d.217.1.2	79420