# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jb9A	316	1.87e+00	1fnc	b.43.4.2	62840
				c.25.1.1	62841
1exbA	332	1.91e+00	1qrqA	c.1.7.1	28666
1us7B	265	2.26e+00			
1o08A	221	4.10e+00		c.108.1.6	86525
1a0cA	438	4.28e+00	1a0cA	c.1.15.3	29529
1unnC	115	4.40e+00			
1gnwA	211	6.27e+00	1gnwA	a.45.1.1	17727
				c.47.1.5	33021
1cunA	213	7.02e+00	1cunA	a.7.1.1	16313
				a.7.1.1	16314
1ec5A	50	7.92e+00	1ec5A	k.8.1.1	46421
2ctc	307	9.50e+00	1aye	c.56.5.1	33802
2cpgA	45	9.90e+00	2cpgA	a.43.1.2	17455
1a8i	842	1.18e+01	1a8i	c.87.1.4	35490
1oq9A	363	1.20e+01		a.25.1.2	87257
1dxrM	323	1.38e+01	6prcM	f.26.1.1	43432
1qbkB	890	1.40e+01	1qbkB	a.118.1.1	19127
1o59A	355	1.50e+01			
1m32A	366	1.59e+01		c.67.1.3	78508
1dtdA	303	1.61e+01	1aye	c.56.5.1	33823
1afrA	345	1.71e+01	1afrA	a.25.1.2	16805
1h1wA	289	1.74e+01		d.144.1.7	83460
1ufoA	238	1.77e+01			
1bbhA	131	1.80e+01	1bbhA	a.24.3.2	16546
1eb6A	177	1.83e+01		d.92.1.12	64895
1fvzA	271	1.87e+01	1fvzA	d.129.3.4	60050
1h5uA	842	1.94e+01	1a8i	c.87.1.4	60655
1hl2A	297	1.99e+01		c.1.10.1	83581
1eljA	381	2.00e+01	4mbp	c.94.1.1	35791
1jb3A	131	2.04e+01	1jc7A	b.40.3.2	62833
1aquA	297	2.39e+01	1aquA	c.37.1.5	31942
7pcy	98	2.45e+01	1plc	b.6.1.1	22863
1i1nA	226	2.62e+01		c.66.1.7	71102
1rtwA	220	2.73e+01			
1pq1B	33	2.82e+01			
1p9eA	331	2.94e+01			
1usuB	170	3.05e+01			
1dvpA	220	3.07e+01	1dvpA	a.118.9.2	19216
				g.50.1.1	45358
1hwxA	501	3.10e+01	1hwyA	c.2.1.7	30250
				c.58.1.1	33898
1iuz	98	3.19e+01	1plc	b.6.1.1	22861
1nal1	297	3.24e+01	1nal3		
1n83A	270	3.28e+01		a.123.1.1	80276
1jm0A	50	3.35e+01		k.8.1.1	66870
1m4lA	307	3.59e+01		c.56.5.1	78604
1ib8A	164	3.80e+01		b.38.2.1	71168
				d.52.4.1	71169
1qb2A	109	3.86e+01	1qb2A	a.36.1.1	17125
1pvc3	238	3.95e+01	1aym3