# List of top-scoring protein chains for t04-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1exbA 332 1.12e-01 1qrqA c.1.7.1 28666 1jb9A 316 2.78e-01 1fnc b.43.4.2 62840 c.25.1.1 62841 1m32A 366 3.51e-01 c.67.1.3 78508 2cpgA 45 9.74e-01 2cpgA a.43.1.2 17455 1us7B 265 1.01e+00 1gnwA 211 2.93e+00 1gnwA a.45.1.1 17727 c.47.1.5 33021 1dxrM 323 3.23e+00 6prcM f.26.1.1 43432 1cunA 213 3.86e+00 1cunA a.7.1.1 16313 a.7.1.1 16314 1rtwA 220 4.56e+00 1m1nA 491 5.07e+00 c.92.2.3 78417 1a8i 842 5.49e+00 1a8i c.87.1.4 35490 1hl2A 297 6.01e+00 c.1.10.1 83581 1bbhA 131 7.12e+00 1bbhA a.24.3.2 16546 1o59A 355 8.03e+00 1h0hB 214 8.34e+00 d.58.1.5 76437 1jnyA 435 9.49e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1fnoA 417 1.00e+01 c.56.5.4 75841 d.58.19.1 70145 1eb6A 177 1.20e+01 d.92.1.12 64895 1oq9A 363 1.23e+01 a.25.1.2 87257 1afrA 345 1.32e+01 1afrA a.25.1.2 16805 1a0cA 438 1.33e+01 1a0cA c.1.15.3 29529 1aisB 200 1.36e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 1p1lA 102 1.37e+01 d.58.5.2 87695 1q77A 138 1.45e+01 1unnC 115 1.62e+01 1ec5A 50 1.65e+01 1ec5A k.8.1.1 46421 3thiA 371 1.67e+01 2thiA c.94.1.1 35792 1iv8A 720 1.72e+01 b.71.1.1 76842 c.1.8.1 76843 1h5uA 842 1.78e+01 1a8i c.87.1.4 60655 1qyaA 307 1.84e+01 1irqA 71 1.94e+01 a.43.1.2 66297 1mv8A 436 1.97e+01 a.100.1.4 85128 c.2.1.6 85129 c.26.3.1 85130 1qbkB 890 2.02e+01 1qbkB a.118.1.1 19127 1evyA 366 2.03e+01 1evyA a.100.1.6 18811 c.2.1.6 30215 1i1nA 226 2.03e+01 c.66.1.7 71102 1mpgA 282 2.16e+01 1mpgA a.96.1.3 18747 d.129.1.2 41296 1eljA 381 2.20e+01 4mbp c.94.1.1 35791 1gxjA 186 2.26e+01 d.215.1.1 70707 1pq1B 33 2.32e+01 1dik 874 2.37e+01 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1ebmA 317 2.52e+01 1ebmA a.96.1.3 18751 d.129.1.2 41300 2a0b 125 2.64e+01 2a0b a.24.10.1 16630 1fyhB 229 2.76e+01 1jrhI b.1.2.1 22055 b.1.2.1 22056 1ufoA 238 2.82e+01 1o08A 221 2.98e+01 c.108.1.6 86525 1iuz 98 3.13e+01 1plc b.6.1.1 22861 1n83A 270 3.19e+01 a.123.1.1 80276 1sdjA 310 3.24e+01 1dvpA 220 3.27e+01 1dvpA a.118.9.2 19216 g.50.1.1 45358 1s0pA 176 3.29e+01 1jb3A 131 3.35e+01 1jc7A b.40.3.2 62833 1ko6A 187 3.42e+01 b.119.1.1 77471 1m4rA 151 3.42e+01 a.26.1.3 84799 1ijxA 127 3.51e+01 1ijxA a.141.1.1 62511 1fm9D 272 3.53e+01 2prgA a.123.1.1 19313 1qb2A 109 3.60e+01 1qb2A a.36.1.1 17125 1v64A 108 3.75e+01 1m6jA 261 3.87e+01 c.1.1.1 78693 1m3qA 317 3.91e+01 1dxrL 273 3.93e+01 6prcL f.26.1.1 43431