CreatePredAlphaCost pred_alpha2k alpha11 T0214.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0214.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 10 near_backbone 3 way_back 3 dry5 10 dry6.5 20 dry8 10 dry12 5 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 30  backbone_clashes 2 \
	break 60  \
	pred_alpha2k 1 \
	pred_alpha04 4 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 15

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	ssbond, hbond, or just arbitrary pairs of atoms.

# from T0214.t04.dssp-ehl2.constraints
HelixConstraint 	E9	K16	0.7848
StrandConstraint	K21	R25	0.7458
StrandConstraint	V39	F42	0.8246
StrandConstraint	K46	V56	0.7036
HelixConstraint 	F60	K66	0.8493
HelixConstraint 	I79	F89	0.6601
HelixConstraint 	E92	K96	0.6536
StrandConstraint	V100	P107	0.677

# from 14+13+27/T0214.t04.dssp-ehl2.constraints
HelixConstraint 	E9	K16	0.8105
StrandConstraint	K20	L26	0.6026
StrandConstraint	V39	F42	0.8379
StrandConstraint	K46	V56	0.7084
HelixConstraint 	F60	N71	0.7093
HelixConstraint 	I79	F89	0.6834
StrandConstraint	V100	P107	0.6986

# from 14+13+27/T0214.t2k.dssp-ehl2.constraints
HelixConstraint 	F11	K16	0.7491
StrandConstraint	K21	R25	0.6955
StrandConstraint	V39	F42	0.7391
StrandConstraint	K46	R55	0.6755
HelixConstraint 	F60	N71	0.6238
HelixConstraint 	I79	F89	0.734
StrandConstraint	V100	L108	0.6534

# from decoys/try3-opt2.sheets
SheetConstraint K21 G24  	I105 A102  	hbond E23	5.0
SheetConstraint K35 S41  	I54 K48  	hbond D38	5.0
SheetConstraint V49 I54  	E109 E104  	hbond K52	5.0
SheetConstraint R55 S59  	E104 V100  	hbond R55	5.0