# List of top-scoring protein chains for T0214.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ojgA 136 2.03e-01 unknown_sccs -10865 1izoA 417 7.98e-01 a.104.1.1 83851 1lcyA 325 1.57e+00 b.36.1.4 73834 b.47.1.1 73835 1uf0A 116 1.65e+00 d.15.11.1 -9199 1b3iA 97 2.31e+00 1plc b.6.1.1 22877 1p9kA 79 2.84e+00 unknown_sccs -10238 1jnyA 435 2.97e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1hdmA 201 2.98e+00 1iakA b.1.1.2 21583 d.19.1.1 38157 1uheA 97 3.15e+00 1lknA 89 3.19e+00 b.82.1.8 84624 1o5uA 101 3.28e+00 b.82.1.8 -4845 1m1hA 248 3.50e+00 b.114.1.1 78415 d.58.42.1 78416 1t95A 240 3.61e+00 1uhdA 96 3.70e+00 1mg4A 113 3.77e+00 d.15.11.1 84953 1oxkA 166 3.99e+00 a.24.10.2 -601 1qspA 165 4.01e+00 1qspA a.24.10.2 16639 1c03A 168 4.03e+00 1qspA a.24.10.2 16635 1e9zA 238 4.07e+00 b.85.3.1 64850 d.8.1.1 64851 1mfwA 107 4.38e+00 d.15.11.1 84940 1fa4A 105 5.16e+00 1plc b.6.1.1 22867 1c02A 166 5.24e+00 1qspA a.24.10.2 16633 1p9qC 256 5.80e+00 1qdbA 473 5.80e+00 1qdbA a.138.1.3 19688 4ubpB 126 5.83e+00 1ubpB b.85.3.1 28345 1ubpB 122 5.84e+00 1ubpB b.85.3.1 28346 1rj7A 163 6.21e+00 b.22.1.1 -3269 1k8hA 133 6.64e+00 b.111.1.1 72176 1p6vA 156 7.45e+00 b.111.1.1 -4284 1giiA 298 7.94e+00 d.144.1.7 65218 1jvpP 298 8.18e+00 d.144.1.7 67371 1e6yC 247 8.21e+00 1mroC d.58.31.1 39441 1cg4A 431 8.22e+00 1adeA c.37.1.10 32228 1pkdA 297 8.23e+00 d.144.1.7 88141 1qmzA 299 8.23e+00 1hcl d.144.1.7 41604 1gz8A 299 8.27e+00 d.144.1.7 83405 1oiuA 302 8.34e+00 1qf5A 431 8.42e+00 1adeA c.37.1.10 32212 1cg1A 431 8.42e+00 1adeA c.37.1.10 32223 1kkbA 432 8.43e+00 c.37.1.10 72643 1vywA 309 8.43e+00 1h1rA 303 8.44e+00 d.144.1.7 76489 1vbe1 300 8.68e+00 1pov1 1oitA 299 8.81e+00 d.144.1.7 -11258 1mjdA 113 8.82e+00 d.15.11.1 84977 1vbb1 300 8.98e+00 1pov1 1mxiA 160 9.01e+00 c.116.1.1 79646 1pvc1 301 9.02e+00 1pov1 1qu9A 128 9.99e+00 1qu9A d.79.1.1 39755 1ndh 272 1.10e+01 1ndh b.43.4.2 25662 c.25.1.1 31552 1e91A 85 1.16e+01 1g1eB a.59.1.1 17930 1nlxA 111 1.16e+01 a.24.17.1 80637 1q8gA 166 1.18e+01 1jj2K 164 1.20e+01 1ffkJ c.12.1.1 63096 1s72L 165 1.20e+01 1a6aA 176 1.26e+01 1iakA b.1.1.2 21615 d.19.1.1 38189 1klgA 177 1.26e+01 b.1.1.2 72714 d.19.1.1 72715 1fv1A 181 1.26e+01 1iakA b.1.1.2 21605 d.19.1.1 38179 1bx2A 180 1.27e+01 1iakA b.1.1.2 21609 d.19.1.1 38183 1c48A 69 1.27e+01 2bosA b.40.2.1 25015 1pywA 182 1.27e+01 b.1.1.2 -2642 d.19.1.1 -9329 1kg0A 180 1.28e+01 b.1.1.2 72441 d.19.1.1 72442 1kluA 179 1.28e+01 b.1.1.2 72724 d.19.1.1 72725 1aqdA 192 1.32e+01 1iakA b.1.1.2 21585 d.19.1.1 38159 1adwA 123 1.34e+01 1bqk b.6.1.1 22893 1bovA 69 1.37e+01 2bosA b.40.2.1 25070 1d1iA 69 1.48e+01 2bosA b.40.2.1 25020 1jgcA 161 1.55e+01 a.25.1.1 66673 1cg3A 431 1.55e+01 1adeA c.37.1.10 32219 1pzwA 80 1.66e+01 unknown_sccs -12740 1fjgD 209 1.68e+01 1c05A d.66.1.2 39553 1n32D 208 1.69e+01 d.66.1.2 79872 1iblD 209 1.70e+01 1c05A i.1.1.1 62188 1n16A 381 1.71e+01 a.83.1.1 79781 d.128.1.2 79782 1rj8A 164 1.77e+01 b.22.1.1 -3263 1kxhA 448 1.79e+01 b.71.1.1 73151 c.1.8.1 73152 1tmo 829 1.81e+01 1dmr b.52.2.2 26919 c.81.1.1 35327 1g94A 448 1.83e+01 b.71.1.1 65169 c.1.8.1 65170 1aqm 453 1.84e+01 1smd b.71.1.1 27717 c.1.8.1 28704 1obvA 169 1.92e+01 c.23.5.1 86782 2plc 274 1.93e+01 2plc c.1.18.2 29614 1jd9A 453 2.00e+01 b.71.1.1 77106 c.1.8.1 77107 1khhA 198 2.00e+01 c.66.1.16 68615 1p1cA 199 2.02e+01 c.66.1.16 87669 1d1kA 69 2.06e+01 2bosA b.40.2.1 25030 1m54A 363 2.07e+01 c.79.1.1 74463 1aod 289 2.09e+01 2plc c.1.18.2 29615 1qhhC 115 2.17e+01 1pjr 1jd7A 453 2.17e+01 b.71.1.1 77104 c.1.8.1 77105 1jbqA 435 2.21e+01 1oasA c.79.1.1 62850 1mfrA 176 2.25e+01 2fha a.25.1.1 16692 1nrkA 328 2.27e+01 unknown_sccs -4071 unknown_sccs -10176 1rcf 169 2.32e+01 1rcf c.23.5.1 31170 1qheA 168 2.33e+01 1rcf c.23.5.1 31177 1e0bA 68 2.35e+01 1e0bA b.34.13.2 37476 1unkA 87 2.45e+01 1cei a.28.2.1 16935 1qauA 112 2.45e+01 1qauA b.36.1.1 24779 1mzbA 136 2.47e+01 unknown_sccs -266 1qavB 115 2.51e+01 1qauA b.36.1.1 24780 1v1pB 213 2.53e+01 1v1pA 211 2.53e+01 1pn2A 280 2.57e+01 d.38.1.4 -9654 d.38.1.4 -9655 1pn4A 280 2.63e+01 d.38.1.4 -9662 d.38.1.4 -9663 1tevA 196 2.68e+01 1b8qA 127 2.73e+01 1qauA b.36.1.1 24781 1r0vA 305 2.83e+01 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1ei3C 409 2.88e+01 i.9.1.1 46005 1m1jC 409 2.91e+01 d.171.1.1 74372 h.1.8.1 74373 1ako 268 2.95e+01 1ako d.151.1.1 41779 1r46A 398 3.02e+01 b.71.1.1 -4658 c.1.8.1 -5286 1pmy 123 3.18e+01 1bqk b.6.1.1 22888 1o4uA 285 3.29e+01 c.1.17.1 86624 d.41.2.1 86625 1gp7A 151 3.40e+01 a.133.1.2 76251 1go3E 187 3.41e+01 b.40.4.5 83054 d.230.1.1 83055 1enfA 212 3.42e+01 3seb b.40.2.2 25198 d.15.6.1 37787 1hxyD 213 3.43e+01 b.40.2.2 61390 d.15.6.1 61391 1f77A 217 3.46e+01 3seb b.40.2.2 25200 d.15.6.1 37789 1hdfA 102 3.47e+01 1ag4 b.11.1.1 23627 1ewcA 214 3.49e+01 3seb b.40.2.2 25199 d.15.6.1 37788 1ag4 103 3.50e+01 1ag4 b.11.1.1 23629 1mh8A 119 3.54e+01 a.133.1.2 84963 1mh7A 119 3.66e+01 a.133.1.2 84962 1p9bA 442 3.70e+01 c.37.1.10 -7115 1ak6 174 3.80e+01 1cof d.109.1.2 40865