# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2plc 274 5.36e-01 2plc c.1.18.2 29614 1jnyA 435 5.79e-01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1p9kA 79 6.29e-01 unknown_sccs -10238 2napA 723 8.51e-01 2napA b.52.2.2 26926 c.81.1.1 35334 1r53A 382 1.34e+00 unknown_sccs -11177 1f60A 458 1.84e+00 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1i18A 97 1.88e+00 b.43.4.3 61520 1lcyA 325 1.99e+00 b.36.1.4 73834 b.47.1.1 73835 1ksfX 758 2.10e+00 a.174.1.1 77522 c.37.1.20 77523 c.37.1.20 77524 1ltlA 279 2.30e+00 b.40.4.11 84701 1e4fT 419 2.40e+00 1e4fT c.55.1.1 33453 c.55.1.1 33454 1uheA 97 2.67e+00 1q16A 1247 2.71e+00 b.52.2.2 -4337 c.81.1.1 -8547 1l7yA 94 2.76e+00 d.15.1.6 73676 1mg4A 113 2.91e+00 d.15.11.1 84953 1aj8A 371 3.02e+00 1aj8A a.103.1.1 18900 1unkA 87 3.67e+00 1cei a.28.2.1 16935 2dpmA 284 3.69e+00 2dpmA c.66.1.28 34246 1e0tA 470 3.76e+00 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1v74A 107 3.77e+00 unknown_sccs -9319 1o9yA 84 3.79e+00 unknown_sccs -4105 1eu1A 780 4.19e+00 1dmr b.52.2.2 26903 c.81.1.1 35311 1v8cA 168 4.23e+00 d.15.3.1 -9175 unknown_sccs -11012 1fjgD 209 4.36e+00 1c05A d.66.1.2 39553 1h0hA 977 5.54e+00 b.52.2.2 76435 c.81.1.1 76436 1ky3A 182 5.99e+00 c.37.1.8 73193 1earA 147 6.16e+00 b.107.1.1 64875 d.58.38.1 64876 1o5uA 101 6.22e+00 b.82.1.8 -4845 1eb0A 147 6.34e+00 b.107.1.1 64890 d.58.38.1 64891 1kqfA 1015 6.38e+00 b.52.2.2 72871 c.81.1.1 72872 1oruA 195 6.55e+00 unknown_sccs -4390 1jt8A 102 6.55e+00 b.40.4.5 63279 1ky9B 448 7.11e+00 b.36.1.4 73200 b.36.1.4 73201 b.47.1.1 73202 1cei 94 7.79e+00 1cei a.28.2.1 16939 1r6xA 395 7.87e+00 b.122.1.3 -5125 c.26.1.5 -6620 2cbp 96 8.46e+00 2cbp b.6.1.1 22895 2fvx 138 8.88e+00 5nul c.23.5.1 31200 1g8jA 825 9.07e+00 1g8jA b.52.2.2 26924 c.81.1.1 35332 1liuA 528 9.28e+00 b.58.1.1 77970 c.1.12.1 77971 c.49.1.1 77972 1g8kA 825 9.46e+00 1g8jA b.52.2.2 26920 c.81.1.1 35328 1h40A 71 9.86e+00 1uzcA 71 9.86e+00 a.159.2.1 -339 1ct9A 553 1.04e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 1db3A 372 1.11e+01 1db3A c.2.1.2 29813 1nngA 153 1.11e+01 d.38.1.1 -9636 1gz8A 299 1.13e+01 d.144.1.7 83405 1fa4A 105 1.13e+01 1plc b.6.1.1 22867 1k8hA 133 1.16e+01 b.111.1.1 72176 1jvpP 298 1.16e+01 d.144.1.7 67371 1mxiA 160 1.17e+01 c.116.1.1 79646 1vioA 243 1.17e+01 unknown_sccs -10154 d.66.1.5 -10240 1e1xA 299 1.21e+01 1hcl d.144.1.7 59157 1hcl 298 1.33e+01 1hcl d.144.1.7 41593 1mp4A 292 1.37e+01 c.68.1.6 79376 1t4hA 290 1.38e+01 1dmr 823 1.40e+01 1dmr b.52.2.2 26904 c.81.1.1 35312 5nul 138 1.44e+01 5nul c.23.5.1 31191 3nll 138 1.49e+01 5nul c.23.5.1 31206 1qauA 112 1.52e+01 1qauA b.36.1.1 24779 1cof 143 1.59e+01 1cof d.109.1.2 40860 1h5rA 293 1.59e+01 c.68.1.6 65623 1gumA 222 1.67e+01 1pgtA a.45.1.1 17683 c.47.1.5 32977 1dk8A 147 1.68e+01 1agrE a.91.1.1 18548 1pzwA 80 1.69e+01 unknown_sccs -12740 1enfA 212 1.79e+01 3seb b.40.2.2 25198 d.15.6.1 37787 1pk6C 129 1.80e+01 b.22.1.1 -3293 1n9eA 787 1.82e+01 b.30.2.1 -3529 d.17.2.1 -9278 d.17.2.1 -9279 1iqsA 88 1.89e+01 d.214.1.1 71278 1i8dA 213 1.90e+01 b.43.4.3 61953 b.43.4.3 61954 1bfd 528 1.95e+01 1bfd c.31.1.3 31745 c.36.1.5 31801 c.36.1.9 31802 1cz4A 185 1.97e+01 1cz4A b.52.2.3 26934 d.31.1.1 38468 1qsgA 265 2.04e+01 1eny c.2.1.2 29935 1gulA 222 2.06e+01 1pgtA a.45.1.1 17675 c.47.1.5 32969 1c14A 262 2.07e+01 1eny c.2.1.2 29927 1d2eA 397 2.07e+01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1oh0A 131 2.09e+01 d.17.4.3 87004 1g8fA 511 2.16e+01 1g8fA b.122.1.3 60348 c.26.1.5 60349 c.37.1.15 60350 1bxsA 501 2.23e+01 1bpwA c.82.1.1 35357 1irk 306 2.25e+01 1fmk d.144.1.7 41703 1o5iA 249 2.45e+01 c.2.1.2 -5833 1a81A 254 2.46e+01 1a81A d.93.1.1 40507 d.93.1.1 40508 1qwlA 505 2.48e+01 e.5.1.1 -11823 1t82A 155 2.49e+01 3adk 195 2.49e+01 1zin c.37.1.1 31885 1k0hA 117 2.52e+01 b.106.1.2 71975 1ak7 174 2.54e+01 1cof d.109.1.2 40864 1odkA 235 2.54e+01 c.56.2.1 86863 1qorA 327 2.60e+01 1qorA b.35.1.2 24766 c.2.1.1 29782 1eljA 381 2.63e+01 4mbp c.94.1.1 35791 1o0iA 138 2.66e+01 d.38.1.5 86532 1jmxB 349 2.74e+01 b.69.2.2 66906 1pwt 61 2.81e+01 1tud b.34.2.1 24490 1ewcA 214 2.82e+01 3seb b.40.2.2 25199 d.15.6.1 37788 1dcfA 136 2.86e+01 1dcfA c.23.1.2 31124 1qcsA 211 2.88e+01 1qcsA b.52.2.3 26927 d.31.1.1 38461 1iz6A 138 2.88e+01 b.34.5.2 76976 b.40.4.5 76977 1erv 105 2.97e+01 1erv c.47.1.1 32743 1iqoA 88 3.00e+01 d.214.1.1 71277 1kepA 348 3.02e+01 c.2.1.2 68536 1ff9A 450 3.05e+01 1ff9A c.2.1.3 30039 d.81.1.2 39954 1oc2A 348 3.07e+01 c.2.1.2 -5753 1pfzA 380 3.07e+01 1smrA b.50.1.2 26881 1opy 131 3.19e+01 1opy d.17.4.3 38113 1eqcA 394 3.24e+01 1cz1A c.1.8.3 28811 1d1nA 99 3.26e+01 1d1nA b.43.3.1 25718 1qavB 115 3.30e+01 1qauA b.36.1.1 24780 1shg 62 3.44e+01 1ckaA b.34.2.1 24493 1dvh 79 3.45e+01 1c53 a.3.1.1 15802 1k47A 337 3.46e+01 d.14.1.5 72040 d.58.26.4 72041 1htrP 43 3.47e+01 1htrP b.50.1.2 26852 1hnjA 317 3.51e+01 1hn9A c.95.1.1 35969 c.95.1.1 35970 1shwB 181 3.51e+01 1ea2A 131 3.53e+01 d.17.4.3 64860 1mw7A 240 3.57e+01 e.39.1.1 79557 4ull 69 3.67e+01 2bosA b.40.2.1 25100 1s3iA 310 3.71e+01 b.46.1.1 -4111 c.65.1.1 -8042 1cz1A 394 3.74e+01 1cz1A c.1.8.3 28839 1erw 105 3.76e+01 1erv c.47.1.1 32745 1dmmA 131 3.82e+01 1opy d.17.4.3 38114 1e6yC 247 3.85e+01 1mroC d.58.31.1 39441 1mfgA 95 3.86e+01 b.36.1.1 79043 1o13A 136 3.92e+01 c.55.5.1 80762 1ewjA 126 3.93e+01 1ecsA d.32.1.2 59526 1semA 58 3.96e+01 1ckaA b.34.2.1 24544