# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o5uA 101 7.08e-01 b.82.1.8 -4845 1mg4A 113 8.49e-01 d.15.11.1 84953 1uheA 97 1.21e+00 1p9kA 79 1.24e+00 unknown_sccs -10238 1fjgD 209 1.26e+00 1c05A d.66.1.2 39553 1adeA 431 1.86e+00 1adeA c.37.1.10 32213 1qf5A 431 2.72e+00 1adeA c.37.1.10 32212 4ubpB 126 2.88e+00 1ubpB b.85.3.1 28345 1ycqA 107 3.01e+00 1ycqA a.42.1.1 17419 1mv8A 436 3.37e+00 a.100.1.4 85128 c.2.1.6 85129 c.26.3.1 85130 1qu9A 128 3.91e+00 1qu9A d.79.1.1 39755 1qu9C 128 3.91e+00 1qu9A d.79.1.1 39757 1ubpB 122 4.22e+00 1ubpB b.85.3.1 28346 1qhhC 115 4.57e+00 1pjr 1mxiA 160 4.99e+00 c.116.1.1 79646 1k8hA 133 5.22e+00 b.111.1.1 72176 1gp7A 151 5.24e+00 a.133.1.2 76251 1fa4A 105 5.61e+00 1plc b.6.1.1 22867 1pvc1 301 5.70e+00 1pov1 1r53A 382 5.90e+00 unknown_sccs -11177 1db3A 372 6.16e+00 1db3A c.2.1.2 29813 1c02A 166 7.87e+00 1qspA a.24.10.2 16633 1qspA 165 1.06e+01 1qspA a.24.10.2 16639 1ej1A 190 1.21e+01 1ejhA d.86.1.1 40144 1i18A 97 1.22e+01 b.43.4.3 61520 1l8bA 190 1.25e+01 d.86.1.1 73683 1hxs1 302 1.27e+01 1oohA 126 1.31e+01 a.39.2.1 -884 1qahA 136 1.45e+01 d.79.1.1 -10377 1v32A 101 1.59e+01 a.42.1.1 -912 1oniA 137 1.72e+01 d.79.1.1 87144 1r13A 148 1.72e+01 d.169.1.1 -11646 h.1.1.1 -12895 1qavB 115 1.77e+01 1qauA b.36.1.1 24780 1lcyA 325 1.85e+01 b.36.1.4 73834 b.47.1.1 73835 1v8cA 168 1.92e+01 d.15.3.1 -9175 unknown_sccs -11012 1ejxB 101 2.13e+01 b.85.3.1 83183 1kepA 348 2.22e+01 c.2.1.2 68536 1rec 201 2.25e+01 1rec a.39.1.5 17326 1dgnA 89 2.26e+01 1dgnA a.77.1.3 18436 1qqiA 104 2.29e+01 1opc a.4.6.1 16233 2cbp 96 2.31e+01 2cbp b.6.1.1 22895 1gxqA 106 2.32e+01 a.4.6.1 70721 1qauA 112 2.41e+01 1qauA b.36.1.1 24779 1gmmA 133 2.41e+01 b.18.1.10 65314 1uxxX 133 2.62e+01 b.18.1.10 -3107 1mjc 69 2.62e+01 1mjc b.40.4.5 25319 1pzwA 80 2.64e+01 unknown_sccs -12740 1o5iA 249 2.84e+01 c.2.1.2 -5833 1fwcB 106 2.86e+01 1ubpB b.85.3.1 28324 1ipcA 217 2.91e+01 d.86.1.1 71257 1dcjA 81 2.94e+01 1dcjA d.68.3.3 59115 1dowA 205 2.99e+01 1dovA a.24.9.1 16626 1oc2A 348 3.00e+01 c.2.1.2 -5753 2kauB 106 3.04e+01 1ubpB b.85.3.1 28328 1ejrB 101 3.17e+01 1ubpB b.85.3.1 28320 1fcdA 401 3.33e+01 1fcdA c.3.1.5 30593 c.3.1.5 30594 d.87.1.1 40218 1lxjA 104 3.34e+01 d.58.48.1 84736 1k66A 149 3.41e+01 c.23.1.1 -6406 1aaj 105 3.46e+01 1aac b.6.1.1 22841 1nmuB 104 3.51e+01 d.79.3.1 80666 1eljA 381 3.64e+01 4mbp c.94.1.1 35791 1knqA 175 3.94e+01 c.37.1.17 72786 1aac 105 3.99e+01 1aac b.6.1.1 22838