# List of top-scoring protein chains for T0214.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ojgA 136 3.49e-01 unknown_sccs -10865 1bjt 793 7.61e-01 1bjt e.11.1.1 43249 1r0vA 305 1.94e+00 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1lcyA 325 2.23e+00 b.36.1.4 73834 b.47.1.1 73835 1uheA 97 2.99e+00 1izoA 417 3.48e+00 a.104.1.1 83851 1uhdA 96 3.49e+00 1mzbA 136 4.61e+00 unknown_sccs -266 1p9kA 79 4.69e+00 unknown_sccs -10238 1t95A 240 5.07e+00 1ls5A 328 5.08e+00 b.50.1.2 74240 1jnyA 435 5.68e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1bxsA 501 6.29e+00 1bpwA c.82.1.1 35357 1uxxX 133 6.62e+00 b.18.1.10 -3107 1p9qC 256 6.77e+00 1ubpB 122 6.80e+00 1ubpB b.85.3.1 28346 4ubpB 126 6.84e+00 1ubpB b.85.3.1 28345 1n16A 381 8.18e+00 a.83.1.1 79781 d.128.1.2 79782 1nrkA 328 8.96e+00 unknown_sccs -4071 unknown_sccs -10176 1rj7A 163 9.45e+00 b.22.1.1 -3269 1fw1A 216 1.02e+01 a.45.1.1 60051 c.47.1.5 60052 1i4dA 224 1.10e+01 h.4.7.1 61682 1o9jA 501 1.17e+01 c.82.1.1 86694 1geqA 248 1.21e+01 2tysA c.1.2.4 28589 1uebA 184 1.33e+01 2plc 274 1.43e+01 2plc c.1.18.2 29614 1aod 289 1.46e+01 2plc c.1.18.2 29615 1oxkA 166 1.48e+01 a.24.10.2 -601 1qspA 165 1.48e+01 1qspA a.24.10.2 16639 1c03A 168 1.50e+01 1qspA a.24.10.2 16635 1v8cA 168 1.63e+01 d.15.3.1 -9175 unknown_sccs -11012 1b3iA 97 1.66e+01 1plc b.6.1.1 22877 1e9zA 238 1.73e+01 b.85.3.1 64850 d.8.1.1 64851 1adwA 123 1.74e+01 1bqk b.6.1.1 22893 1fa4A 105 1.75e+01 1plc b.6.1.1 22867 1jj2K 164 1.77e+01 1ffkJ c.12.1.1 63096 1s72L 165 1.77e+01 1pmy 123 1.80e+01 1bqk b.6.1.1 22888 1fv1A 181 1.81e+01 1iakA b.1.1.2 21605 d.19.1.1 38179 1klgA 177 1.81e+01 b.1.1.2 72714 d.19.1.1 72715 1a6aA 176 1.82e+01 1iakA b.1.1.2 21615 d.19.1.1 38189 1bx2A 180 1.82e+01 1iakA b.1.1.2 21609 d.19.1.1 38183 1pywA 182 1.83e+01 b.1.1.2 -2642 d.19.1.1 -9329 1kg0A 180 1.84e+01 b.1.1.2 72441 d.19.1.1 72442 1kluA 179 1.84e+01 b.1.1.2 72724 d.19.1.1 72725 1jgcA 161 1.87e+01 a.25.1.1 66673 1aqdA 192 1.88e+01 1iakA b.1.1.2 21585 d.19.1.1 38159 1go3E 187 1.89e+01 b.40.4.5 83054 d.230.1.1 83055 1ndh 272 1.92e+01 1ndh b.43.4.2 25662 c.25.1.1 31552 1c02A 166 1.93e+01 1qspA a.24.10.2 16633 1cx4A 305 2.08e+01 b.82.3.2 59099 b.82.3.2 59100 3ezaA 249 2.08e+01 1zymA a.60.10.1 18112 c.8.1.2 30707 1zymA 258 2.20e+01 1zymA a.60.10.1 18110 c.8.1.2 30705 1eza 259 2.21e+01 1zymA a.60.10.1 18113 c.8.1.2 30708 1qdbA 473 2.30e+01 1qdbA a.138.1.3 19688 1khhA 198 2.34e+01 c.66.1.16 68615 1p1cA 199 2.36e+01 c.66.1.16 87669 1jl4A 178 2.37e+01 b.1.1.2 63157 d.19.1.1 63158 1fl0A 171 2.40e+01 1eujA b.40.4.4 25315 1eujA 166 2.42e+01 1eujA b.40.4.4 25316 1q8gA 166 2.43e+01 1d9kC 183 2.46e+01 1iakA b.1.1.2 21627 d.19.1.1 38201 1gr0A 367 2.55e+01 c.2.1.3 70379 d.81.1.3 70380 1e7zA 174 2.56e+01 1eujA b.40.4.4 25318 1p9bA 442 2.56e+01 c.37.1.10 -7115 1unkA 87 2.57e+01 1cei a.28.2.1 16935 1i6vD 1264 2.62e+01 e.29.1.2 61857 1mxiA 160 2.65e+01 c.116.1.1 79646 1iakA 199 2.65e+01 1iakA b.1.1.2 21625 d.19.1.1 38199 1mh8A 119 2.67e+01 a.133.1.2 84963 1mh7A 119 2.72e+01 a.133.1.2 84962 1hqmD 1265 2.81e+01 i.8.1.1 45975 1lknA 89 2.86e+01 b.82.1.8 84624 1eiwA 111 2.91e+01 1eiwA c.23.3.1 31130 1vbe1 300 2.99e+01 1pov1 1ru7A 327 2.99e+01 b.19.1.2 -3180 1mw7A 240 3.00e+01 e.39.1.1 79557 1gp7A 151 3.00e+01 a.133.1.2 76251 1rvxA 327 3.00e+01 b.19.1.2 -3186 1o5uA 101 3.01e+01 b.82.1.8 -4845 1vbb1 300 3.02e+01 1pov1 1pvc1 301 3.04e+01 1pov1 1j54A 186 3.47e+01 c.55.3.5 77077 1jeoA 180 3.48e+01 c.80.1.3 66611 1sa0E 143 3.54e+01 unknown_sccs -2020 1ptq 50 3.59e+01 1ptq g.49.1.1 45349 1uf0A 116 3.61e+01 d.15.11.1 -9199 1pzwA 80 3.65e+01 unknown_sccs -12740 1ppt 36 3.78e+01 1ppt j.6.1.1 46089