# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1r13A 148 1.16e-01 d.169.1.1 -11646 h.1.1.1 -12895 1t62A 166 2.44e-01 1r53A 382 2.90e-01 unknown_sccs -11177 1khiA 176 3.84e-01 b.34.5.2 77408 b.40.4.5 77409 1o5uA 101 4.10e-01 b.82.1.8 -4845 1fjgQ 105 4.79e-01 1fjfQ b.40.4.5 25352 1uxxX 133 7.31e-01 b.18.1.10 -3107 1gmmA 133 9.07e-01 b.18.1.10 65314 1mjc 69 1.49e+00 1mjc b.40.4.5 25319 1gmuA 143 1.54e+00 b.107.1.1 65335 d.58.38.1 65336 1dm9A 133 1.59e+00 1dm9A d.66.1.3 39560 1h6hA 143 2.17e+00 d.189.1.1 65681 1g8fA 511 2.19e+00 1g8fA b.122.1.3 60348 c.26.1.5 60349 c.37.1.15 60350 1rtm1 149 2.49e+00 1rtm1 2ahjB 212 2.72e+00 2ahjB b.34.4.4 24599 1p9kA 79 2.75e+00 unknown_sccs -10238 1r6xA 395 2.80e+00 b.122.1.3 -5125 c.26.1.5 -6620 1hk9A 74 2.90e+00 b.38.1.2 83541 1bkb 136 2.96e+00 1bkb b.34.5.2 24609 b.40.4.5 25341 1e0tA 470 3.39e+00 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1oruA 195 3.41e+00 unknown_sccs -4390 1c9oA 66 4.03e+00 1mjc b.40.4.5 25325 1qavA 90 4.08e+00 1qauA b.36.1.1 24777 1qcsA 211 4.40e+00 1qcsA b.52.2.3 26927 d.31.1.1 38461 2eifA 136 4.64e+00 1bkb b.34.5.2 24607 b.40.4.5 25339 1b33N 67 4.70e+00 1b33N d.30.1.1 38459 1semA 58 4.92e+00 1ckaA b.34.2.1 24544 1fs1B 141 4.92e+00 1vcbB a.157.1.1 19252 d.42.1.1 38664 1db3A 372 5.13e+00 1db3A c.2.1.2 29813 1gcqC 70 5.15e+00 1gcpA b.34.2.1 60436 1afb1 154 5.21e+00 1rtm1 1pyaB 228 5.40e+00 1pyaB 1iz6A 138 6.05e+00 b.34.5.2 76976 b.40.4.5 76977 1h9sA 140 6.67e+00 1b9mA b.40.6.2 60843 b.40.6.2 60844 1l6oA 95 6.73e+00 b.36.1.1 84534 1unnC 115 7.36e+00 unknown_sccs -10216 1bb9 115 7.43e+00 1bb9 b.34.2.1 24554 1fw1A 216 7.53e+00 a.45.1.1 60051 c.47.1.5 60052 1h8uA 117 8.04e+00 1h8uA d.169.1.1 60793 1n27A 96 8.08e+00 b.34.9.2 -3585 1g6gA 127 8.48e+00 1g6gA b.26.1.2 23916 1lr7A 74 9.05e+00 g.3.11.3 84679 unknown_sccs 84680 1r9fA 136 9.11e+00 unknown_sccs -10736 1gz2A 142 9.16e+00 d.169.1.1 83392 1mxiA 160 9.64e+00 c.116.1.1 79646 1fm0D 81 9.69e+00 1fmaD d.15.3.1 37642 1kq1A 77 9.76e+00 b.38.1.2 72848 3ullA 132 1.06e+01 3ullA b.40.4.3 25282 4ubpB 126 1.07e+01 1ubpB b.85.3.1 28345 1g2bA 62 1.08e+01 1tud b.34.2.1 24488 1ri5A 298 1.12e+01 unknown_sccs -8063 2kinA 238 1.14e+01 1bg2 c.37.1.9 32190 1uxzA 131 1.16e+01 b.18.1.10 -3110 1at0 145 1.17e+01 1at0 b.86.1.1 28374 1tuc 63 1.17e+01 1tuc b.34.2.1 24492 1pueE 89 1.23e+01 1awcA a.4.5.21 16165 1eejA 216 1.23e+01 1eejA c.47.1.9 33057 d.17.3.1 38071 1pqnA 127 1.25e+01 c.47.1.8 -7479 1uheA 97 1.32e+01 1d2eA 397 1.32e+01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1ckaA 57 1.37e+01 1ckaA b.34.2.1 24459 1earA 147 1.40e+01 b.107.1.1 64875 d.58.38.1 64876 1ctn 540 1.43e+01 1ctn b.1.18.2 21876 c.1.8.5 29005 d.26.3.1 38439 2rslA 140 1.44e+01 2rslA c.53.1.1 33345 1unkA 87 1.44e+01 1cei a.28.2.1 16935 1o54A 277 1.53e+01 c.66.1.13 -8095 1rie 129 1.59e+01 1rie b.33.1.1 24427 1k66A 149 1.66e+01 c.23.1.1 -6406 1uxy 340 1.68e+01 2mbr d.145.1.2 41748 d.146.1.1 41761 1dfuP 94 1.73e+01 1dfuP b.53.1.1 26936 1bdo 80 1.78e+01 1bdo b.84.1.1 28214 1vie 62 1.81e+01 1vie b.34.4.1 24592 1whi 122 1.82e+01 1whi b.39.1.1 24810 1ko7A 314 1.84e+01 c.98.2.1 72797 c.91.1.2 72798 1jznA 135 1.87e+01 d.169.1.1 84262 1kssA 571 1.93e+01 a.138.1.3 72928 c.3.1.4 72929 d.168.1.1 72930 1fjgS 93 1.94e+01 1qkfA d.28.1.1 38451 1t0hA 132 1.98e+01 1aw8B 91 1.99e+01 1aw8B 1bvqA 141 2.04e+01 1bvqA d.38.1.1 38542 1r4xA 275 2.04e+01 unknown_sccs -2846 unknown_sccs -10776 1euwA 152 2.06e+01 1dupA b.85.4.1 28349 1f60A 458 2.08e+01 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1uj0A 62 2.12e+01 b.34.2.1 -3570 1edqA 540 2.16e+01 1ctn b.1.18.2 21873 c.1.8.5 29002 d.26.3.1 38436 1t9fA 187 2.17e+01 1bg2 325 2.18e+01 1bg2 c.37.1.9 32189 1k0hA 117 2.20e+01 b.106.1.2 71975 1oc2A 348 2.23e+01 c.2.1.2 -5753 1jwiA 131 2.25e+01 d.169.1.1 67383 1pht 85 2.26e+01 1ckaA b.34.2.1 24483 1vhtA 218 2.27e+01 c.37.1.1 -7004 1h9oA 112 2.27e+01 1qadA d.93.1.1 60837 1b4fA 82 2.32e+01 1b4fA a.60.1.2 17934 1shdA 107 2.38e+01 1fmk d.93.1.1 40440 1osyA 115 2.38e+01 unknown_sccs -2857 1n3lA 372 2.44e+01 c.26.1.1 79966 1qlaB 239 2.47e+01 1qlaB a.1.2.1 15679 d.15.4.2 37707 1nykA 165 2.53e+01 b.33.1.1 86408 1ckmA 330 2.53e+01 1ckmA b.40.4.6 25358 d.142.2.3 41585 1e4fT 419 2.56e+01 1e4fT c.55.1.1 33453 c.55.1.1 33454 1zin 217 2.57e+01 1zin c.37.1.1 31915 g.41.2.1 45178 1m0dA 138 2.64e+01 c.52.1.17 74354 1g2fC 90 2.76e+01 k.12.1.1 60222 1h7sA 365 2.76e+01 d.14.1.3 65705 d.122.1.2 65706 2cbp 96 2.78e+01 2cbp b.6.1.1 22895 1tn3 137 2.78e+01 1htn d.169.1.1 42423 1ahsA 126 2.79e+01 1ahsA b.19.1.1 23794 1i8dA 213 2.90e+01 b.43.4.3 61953 b.43.4.3 61954 1ireB 228 2.99e+01 b.34.4.4 76770 1gppA 237 3.04e+01 b.86.1.2 76262 1umuA 116 3.05e+01 1umuA b.87.1.1 28382 1hdmB 193 3.05e+01 1hdmB b.1.1.2 21584 d.19.1.1 38158 1e39A 571 3.12e+01 1qjdA a.138.1.3 19694 c.3.1.4 30431 d.168.1.1 42314 1exmA 405 3.13e+01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1d5qA 27 3.22e+01 k.23.1.2 46454 1fzrA 138 3.24e+01 1fzrA c.52.1.17 33336 1o13A 136 3.30e+01 c.55.5.1 80762 1q9iA 571 3.32e+01 a.138.1.3 -2051 c.3.1.4 -6041 d.168.1.1 -11607 1g291 372 3.39e+01 1g291 1utiA 58 3.50e+01 b.34.2.1 -3552 2tnfA 156 3.63e+01 2tnfA b.22.1.1 23880 1um0A 365 3.67e+01 1di2A 69 3.69e+01 1di2A d.50.1.1 38780 1ugpB 226 3.73e+01 1qu9A 128 3.74e+01 1qu9A d.79.1.1 39755 1rkuA 206 3.86e+01 unknown_sccs -6823 1i2kA 269 3.90e+01 e.17.1.1 -11995 1a62 130 3.93e+01 1a62 a.140.3.1 64708 b.40.4.5 64709 1ei5A 520 3.95e+01 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1hxs1 302 3.96e+01 1r1gA 31 3.99e+01 g.3.7.2 -12445