# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e4fT 419 1.25e-01 1e4fT c.55.1.1 33453 c.55.1.1 33454 2plc 274 2.16e-01 2plc c.1.18.2 29614 1r53A 382 7.66e-01 unknown_sccs -11177 1p9kA 79 9.16e-01 unknown_sccs -10238 1k47A 337 1.22e+00 d.14.1.5 72040 d.58.26.4 72041 1mw7A 240 1.28e+00 e.39.1.1 79557 1jnyA 435 2.60e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 2napA 723 3.14e+00 2napA b.52.2.2 26926 c.81.1.1 35334 1pfzA 380 3.35e+00 1smrA b.50.1.2 26881 1f60A 458 3.56e+00 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1fjgD 209 3.60e+00 1c05A d.66.1.2 39553 1unkA 87 4.24e+00 1cei a.28.2.1 16935 1v8cA 168 5.66e+00 d.15.3.1 -9175 unknown_sccs -11012 1earA 147 5.66e+00 b.107.1.1 64875 d.58.38.1 64876 1jznA 135 6.10e+00 d.169.1.1 84262 1enfA 212 6.32e+00 3seb b.40.2.2 25198 d.15.6.1 37787 1ky3A 182 6.32e+00 c.37.1.8 73193 1o9yA 84 8.08e+00 unknown_sccs -4105 1e6yC 247 8.09e+00 1mroC d.58.31.1 39441 1fviA 297 8.34e+00 1fviA b.40.4.6 25364 d.142.2.1 41578 1uxxX 133 8.52e+00 b.18.1.10 -3107 1l7yA 94 8.87e+00 d.15.1.6 73676 1gmmA 133 8.97e+00 b.18.1.10 65314 1geqA 248 9.22e+00 2tysA c.1.2.4 28589 1t62A 166 9.26e+00 1cei 94 9.32e+00 1cei a.28.2.1 16939 1uheA 97 9.48e+00 1f56A 91 1.15e+01 2cbp b.6.1.1 22896 1ct9A 553 1.17e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 1izcA 339 1.18e+01 c.1.12.5 83838 1erv 105 1.21e+01 1erv c.47.1.1 32743 1aiu 105 1.21e+01 1erv c.47.1.1 32746 1d1nA 99 1.27e+01 1d1nA b.43.3.1 25718 1e9rA 437 1.29e+01 c.37.1.11 64827 1uq5A 263 1.30e+01 d.165.1.1 -11555 1ars 396 1.36e+01 1ajsA c.67.1.1 34287 1qgvA 142 1.41e+01 1qgvA c.47.1.8 33056 1eemA 241 1.52e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 1v74A 107 1.65e+01 unknown_sccs -9319 1lf2A 331 1.65e+01 b.50.1.2 77914 1o5iA 249 1.65e+01 c.2.1.2 -5833 1d2eA 397 1.67e+01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1uzcA 71 1.73e+01 a.159.2.1 -339 1pk6C 129 1.78e+01 b.22.1.1 -3293 1s3iA 310 1.84e+01 b.46.1.1 -4111 c.65.1.1 -8042 1aj8A 371 1.93e+01 1aj8A a.103.1.1 18900 1odkA 235 2.03e+01 c.56.2.1 86863 1j24A 143 2.10e+01 c.52.1.20 84008 1mxiA 160 2.12e+01 c.116.1.1 79646 1b00A 127 2.13e+01 3chy c.23.1.1 31122 1nngA 153 2.15e+01 d.38.1.1 -9636 1lcyA 325 2.28e+01 b.36.1.4 73834 b.47.1.1 73835 1i8dA 213 2.29e+01 b.43.4.3 61953 b.43.4.3 61954 1e0tA 470 2.29e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 2cbp 96 2.31e+01 2cbp b.6.1.1 22895 1kqfA 1015 2.34e+01 b.52.2.2 72871 c.81.1.1 72872 1r6xA 395 2.36e+01 b.122.1.3 -5125 c.26.1.5 -6620 1ift 263 2.36e+01 1mrj d.165.1.1 42211 1qwlA 505 2.37e+01 e.5.1.1 -11823 1eqcA 394 2.39e+01 1cz1A c.1.8.3 28811 1qcsA 211 2.40e+01 1qcsA b.52.2.3 26927 d.31.1.1 38461 1s6bA 119 2.56e+01 a.133.1.2 -1953 1gz8A 299 2.60e+01 d.144.1.7 83405 1hcl 298 2.77e+01 1hcl d.144.1.7 41593 1eljA 381 2.77e+01 4mbp c.94.1.1 35791 1oruA 195 2.79e+01 unknown_sccs -4390 1o5uA 101 2.81e+01 b.82.1.8 -4845 1p5fA 189 2.96e+01 c.23.16.2 -6508 1cb0A 283 2.97e+01 1cb0A c.56.2.1 33790 1mg4A 113 3.13e+01 d.15.11.1 84953 1dkqA 410 3.18e+01 1dklA c.60.1.2 33998 1kepA 348 3.22e+01 c.2.1.2 68536 1oc2A 348 3.24e+01 c.2.1.2 -5753 1fc6A 388 3.26e+01 1fc6A b.36.1.3 64738 c.14.1.2 64739 1vdeA 454 3.36e+01 1vdeA b.86.1.2 28378 d.95.2.2 40581 d.95.2.2 40582 1eu1A 780 3.39e+01 1dmr b.52.2.2 26903 c.81.1.1 35311 1faaA 124 3.42e+01 1erv c.47.1.1 32738 1i1kA 309 3.45e+01 1daaA e.17.1.1 61533 1dmmA 131 3.45e+01 1opy d.17.4.3 38114 1h0hA 977 3.46e+01 b.52.2.2 76435 c.81.1.1 76436 1mp4A 292 3.49e+01 c.68.1.6 79376 1qisA 396 3.58e+01 1ajsA c.67.1.1 34284 2rslA 140 3.63e+01 2rslA c.53.1.1 33345 1t9fA 187 3.77e+01 1ahxA 396 3.80e+01 1ajsA c.67.1.1 34293 1db3A 372 3.84e+01 1db3A c.2.1.2 29813 1khiA 176 3.85e+01 b.34.5.2 77408 b.40.4.5 77409 1j1bA 420 3.89e+01 d.144.1.7 -11312 1qciA 262 3.91e+01 1qi7A d.165.1.1 42201 1bjt 793 3.94e+01 1bjt e.11.1.1 43249