# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2plc 274 5.06e-02 2plc c.1.18.2 29614 1f60A 458 7.79e-02 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1jnyA 435 1.07e-01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1i8dA 213 2.12e-01 b.43.4.3 61953 b.43.4.3 61954 1oruA 195 4.64e-01 unknown_sccs -4390 1izcA 339 5.53e-01 c.1.12.5 83838 1uheA 97 5.81e-01 2napA 723 5.92e-01 2napA b.52.2.2 26926 c.81.1.1 35334 1fjgD 209 6.11e-01 1c05A d.66.1.2 39553 1e4fT 419 7.90e-01 1e4fT c.55.1.1 33453 c.55.1.1 33454 1o9yA 84 1.02e+00 unknown_sccs -4105 1khiA 176 1.10e+00 b.34.5.2 77408 b.40.4.5 77409 1e0tA 470 1.29e+00 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1k47A 337 1.39e+00 d.14.1.5 72040 d.58.26.4 72041 1d2eA 397 1.45e+00 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1qisA 396 1.46e+00 1ajsA c.67.1.1 34284 1geqA 248 1.68e+00 2tysA c.1.2.4 28589 1odkA 235 1.72e+00 c.56.2.1 86863 1r13A 148 1.82e+00 d.169.1.1 -11646 h.1.1.1 -12895 1eu1A 780 1.82e+00 1dmr b.52.2.2 26903 c.81.1.1 35311 1pfzA 380 1.88e+00 1smrA b.50.1.2 26881 1ars 396 2.11e+00 1ajsA c.67.1.1 34287 1np7A 489 2.23e+00 a.99.1.1 80677 c.28.1.1 80678 1r6xA 395 2.28e+00 b.122.1.3 -5125 c.26.1.5 -6620 1b00A 127 2.35e+00 3chy c.23.1.1 31122 1gmmA 133 2.41e+00 b.18.1.10 65314 1ahxA 396 2.46e+00 1ajsA c.67.1.1 34293 1h0hA 977 2.52e+00 b.52.2.2 76435 c.81.1.1 76436 1g8fA 511 2.62e+00 1g8fA b.122.1.3 60348 c.26.1.5 60349 c.37.1.15 60350 1uxxX 133 2.76e+00 b.18.1.10 -3107 1ltlA 279 2.86e+00 b.40.4.11 84701 1iz6A 138 2.88e+00 b.34.5.2 76976 b.40.4.5 76977 1db3A 372 3.22e+00 1db3A c.2.1.2 29813 1earA 147 3.25e+00 b.107.1.1 64875 d.58.38.1 64876 1v8cA 168 3.39e+00 d.15.3.1 -9175 unknown_sccs -11012 1cb0A 283 3.79e+00 1cb0A c.56.2.1 33790 1qcsA 211 3.80e+00 1qcsA b.52.2.3 26927 d.31.1.1 38461 2dpmA 284 3.91e+00 2dpmA c.66.1.28 34246 1kqfA 1015 3.99e+00 b.52.2.2 72871 c.81.1.1 72872 1unkA 87 4.01e+00 1cei a.28.2.1 16935 1a49A 530 4.15e+00 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1nngA 153 4.16e+00 d.38.1.1 -9636 1o5uA 101 4.21e+00 b.82.1.8 -4845 1t9fA 187 4.27e+00 1p9kA 79 4.36e+00 unknown_sccs -10238 1l6oA 95 4.37e+00 b.36.1.1 84534 1l5wA 796 4.38e+00 c.87.1.4 73605 1bg6 359 4.39e+00 1bg6 a.100.1.5 18810 c.2.1.6 30214 1aiu 105 4.50e+00 1erv c.47.1.1 32746 1mxiA 160 4.54e+00 c.116.1.1 79646 1o1zA 234 4.71e+00 c.1.18.3 86555 4ubpB 126 4.72e+00 1ubpB b.85.3.1 28345 1aw8B 91 4.81e+00 1aw8B 1t62A 166 5.17e+00 1erv 105 5.73e+00 1erv c.47.1.1 32743 1l7yA 94 5.83e+00 d.15.1.6 73676 1lcyA 325 5.87e+00 b.36.1.4 73834 b.47.1.1 73835 1f56A 91 6.20e+00 2cbp b.6.1.1 22896 1gmuA 143 6.63e+00 b.107.1.1 65335 d.58.38.1 65336 1qauA 112 7.00e+00 1qauA b.36.1.1 24779 1gcqC 70 7.00e+00 1gcpA b.34.2.1 60436 1ha3A 405 7.02e+00 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1kzlA 208 7.08e+00 b.43.4.3 77635 b.43.4.3 77636 2cbp 96 7.17e+00 2cbp b.6.1.1 22895 1dkqA 410 7.28e+00 1dklA c.60.1.2 33998 1uq5A 263 7.48e+00 d.165.1.1 -11555 1rie 129 7.50e+00 1rie b.33.1.1 24427 1r53A 382 7.56e+00 unknown_sccs -11177 1m93A 55 7.72e+00 e.1.1.1 -11751 1jb3A 131 7.95e+00 1jc7A b.40.3.2 62833 1uxzA 131 8.19e+00 b.18.1.10 -3110 1rzhH 260 8.48e+00 b.41.1.1 -3979 f.23.10.1 -12092 1v5lA 103 8.58e+00 1jznA 135 8.61e+00 d.169.1.1 84262 1hyoA 421 8.64e+00 1qcnA b.34.8.1 59001 d.177.1.1 59002 1d1nA 99 9.00e+00 1d1nA b.43.3.1 25718 1qgvA 142 9.22e+00 1qgvA c.47.1.8 33056 1q1gA 276 9.25e+00 c.56.2.1 -7846 1exmA 405 9.34e+00 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1a9xB 379 9.34e+00 1c3oB c.8.3.1 30732 c.23.16.1 31409 1q3oA 109 9.59e+00 b.36.1.1 -3776 1hh2P 344 9.80e+00 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1j2rA 199 9.82e+00 unknown_sccs -6799 1rxyA 253 9.93e+00 c.56.2.1 -7834 1semA 58 1.03e+01 1ckaA b.34.2.1 24544 1uzcA 71 1.04e+01 a.159.2.1 -339 1cz4A 185 1.04e+01 1cz4A b.52.2.3 26934 d.31.1.1 38468 1lx7A 253 1.04e+01 c.56.2.1 74329 1kwaA 88 1.05e+01 1kwaA b.36.1.1 24772 1pqhA 143 1.09e+01 b.52.2.1 -4318 1k0hA 117 1.10e+01 b.106.1.2 71975 1djxA 624 1.10e+01 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 1bif 469 1.12e+01 1bif c.37.1.7 31961 c.60.1.4 34003 1iw7C 1119 1.12e+01 e.29.1.1 71474 1vdeA 454 1.12e+01 1vdeA b.86.1.2 28378 d.95.2.2 40581 d.95.2.2 40582 1nykA 165 1.12e+01 b.33.1.1 86408 1qciA 262 1.18e+01 1qi7A d.165.1.1 42201 1djxB 624 1.21e+01 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 2eifA 136 1.23e+01 1bkb b.34.5.2 24607 b.40.4.5 25339 1dmmA 131 1.27e+01 1opy d.17.4.3 38114 1fc6A 388 1.28e+01 1fc6A b.36.1.3 64738 c.14.1.2 64739 1g2bA 62 1.29e+01 1tud b.34.2.1 24488 1nt4A 391 1.29e+01 c.60.1.2 -7942 1o13A 136 1.30e+01 c.55.5.1 80762 1s9rA 410 1.36e+01 unknown_sccs -10989 1vj0A 380 1.38e+01 b.35.1.2 -3697 c.2.1.1 -5721 1bb9 115 1.39e+01 1bb9 b.34.2.1 24554 1nw2A 105 1.43e+01 c.47.1.1 -7380 1uwwA 191 1.44e+01 1opy 131 1.49e+01 1opy d.17.4.3 38113 1fvgA 199 1.49e+01 1fvaA d.58.28.1 39408 1ift 263 1.52e+01 1mrj d.165.1.1 42211 5reqA 727 1.53e+01 1reqA c.1.19.1 29632 c.23.6.1 31259 1qavA 90 1.56e+01 1qauA b.36.1.1 24777 1fjgQ 105 1.58e+01 1fjfQ b.40.4.5 25352 1q16A 1247 1.61e+01 b.52.2.2 -4337 c.81.1.1 -8547 1eljA 381 1.62e+01 4mbp c.94.1.1 35791 1htrP 43 1.64e+01 1htrP b.50.1.2 26852 1ccwA 137 1.66e+01 1be1 c.23.6.1 31238 1tuc 63 1.66e+01 1tuc b.34.2.1 24492 1kypA 237 1.69e+01 d.22.1.1 73280 1qwlA 505 1.72e+01 e.5.1.1 -11823 1hcl 298 1.72e+01 1hcl d.144.1.7 41593 1qovH 260 1.72e+01 6prcH b.41.1.1 25464 f.23.10.1 43457 1je0A 236 1.72e+01 c.56.2.1 66581 1pk6C 129 1.73e+01 b.22.1.1 -3293 1gz8A 299 1.75e+01 d.144.1.7 83405 1oc2A 348 1.81e+01 c.2.1.2 -5753 1v74A 107 1.82e+01 unknown_sccs -9319 1f8fA 371 1.82e+01 b.35.1.2 83246 c.2.1.1 83247 1j5yA 187 1.84e+01 a.4.5.1 71592 d.94.2.1 71593 1fm0D 81 1.84e+01 1fmaD d.15.3.1 37642 1fqtA 112 1.85e+01 1fqtA b.33.1.1 24441 1cl1A 395 1.85e+01 1cl2A c.67.1.3 34395 1mw7A 240 1.86e+01 e.39.1.1 79557 2arcA 164 1.93e+01 2arcA b.82.4.1 28148 1ewnA 219 1.93e+01 1bnkA b.46.1.2 25762 1gttA 429 2.00e+01 d.177.1.1 70529 d.177.1.1 70530 2ptd 298 2.00e+01 2plc c.1.18.2 29605 1eejA 216 2.01e+01 1eejA c.47.1.9 33057 d.17.3.1 38071 1reqA 727 2.02e+01 1reqA c.1.19.1 29620 c.23.6.1 31247 1tmy 120 2.04e+01 1dbwA c.23.1.1 31083 1q7hA 153 2.05e+01 b.122.1.1 -5124 unknown_sccs -9313 1lylA 504 2.14e+01 1lylA b.40.4.1 25261 d.104.1.1 40717 1gppA 237 2.16e+01 b.86.1.2 76262 1dm9A 133 2.17e+01 1dm9A d.66.1.3 39560 1k66A 149 2.20e+01 c.23.1.1 -6406 1epwA 1290 2.21e+01 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1s3iA 310 2.23e+01 b.46.1.1 -4111 c.65.1.1 -8042 1mtyB 384 2.24e+01 1mtyB a.25.1.2 16740 1aonO 97 2.25e+01 b.35.1.1 24642 1e9rA 437 2.28e+01 c.37.1.11 64827 1ks8A 433 2.29e+01 a.102.1.2 77519 1i7dA 659 2.32e+01 1d6mA e.10.1.1 61886 1i7pA 274 2.36e+01 b.43.4.2 66048 c.25.1.1 66049 1i7oA 429 2.45e+01 1i7oA d.177.1.1 61893 d.177.1.1 61894 1cei 94 2.47e+01 1cei a.28.2.1 16939 1s6bA 119 2.48e+01 a.133.1.2 -1953 1hdcA 253 2.49e+01 1e6wA c.2.1.2 29862 1ckaA 57 2.50e+01 1ckaA b.34.2.1 24459 1qo3C 137 2.50e+01 1qo3C d.169.1.1 42350 1aj8A 371 2.50e+01 1aj8A a.103.1.1 18900 1vioA 243 2.53e+01 unknown_sccs -10154 d.66.1.5 -10240 1ey4A 149 2.54e+01 1snc b.40.1.1 24815 1iieA 75 2.54e+01 1iieA a.109.1.1 19039 1mfgA 95 2.58e+01 b.36.1.1 79043 1lzjA 292 2.64e+01 c.68.1.9 74352 1ihjA 98 2.67e+01 1pdr b.36.1.1 62382 1n3lA 372 2.69e+01 c.26.1.1 79966 1k8rB 110 2.69e+01 d.15.1.5 72180 1eqoA 158 2.70e+01 1hka 1mp4A 292 2.70e+01 c.68.1.6 79376 1n7eA 97 2.75e+01 b.36.1.1 -3745 1o7dE 126 2.81e+01 1ndh 272 2.82e+01 1ndh b.43.4.2 25662 c.25.1.1 31552 1ecrA 309 2.83e+01 1ecrA e.2.1.1 42678 2sns 149 2.84e+01 1snc b.40.1.1 24860 1fuxA 166 2.87e+01 1fjjA b.17.1.2 60034 1f9yA 158 2.89e+01 d.58.30.1 83249 1mg4A 113 2.91e+01 d.15.11.1 84953 1rreA 200 2.96e+01 unknown_sccs -9106 1e1oA 504 3.01e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1plc 99 3.03e+01 1plc b.6.1.1 22846 1mjc 69 3.06e+01 1mjc b.40.4.5 25319 1ejxC 567 3.07e+01 b.92.1.1 83184 c.1.9.2 83185 1gc0A 398 3.07e+01 c.67.1.3 70168 2rslA 140 3.09e+01 2rslA c.53.1.1 33345 1ixlA 131 3.11e+01 d.38.1.5 -9705 1bxaA 105 3.11e+01 1aac b.6.1.1 22839 1h2bA 359 3.14e+01 b.35.1.2 -3679 c.2.1.1 -5703 1o0iA 138 3.15e+01 d.38.1.5 86532 1umuA 116 3.17e+01 1umuA b.87.1.1 28382 1s6bB 119 3.17e+01 a.133.1.2 -1954 1jigA 146 3.19e+01 a.25.1.1 71685 1ct5A 256 3.20e+01 1ct5A c.1.6.2 28663 1ir3A 306 3.28e+01 1fmk d.144.1.7 41702 1qu9A 128 3.29e+01 1qu9A d.79.1.1 39755 1eemA 241 3.30e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 1miwA 404 3.33e+01 a.173.1.1 79162 d.218.1.4 79163 1kgyA 181 3.37e+01 b.18.1.4 72449 1ek9A 428 3.38e+01 1ek9A f.5.1.1 43809 1aac 105 3.43e+01 1aac b.6.1.1 22838 1zin 217 3.44e+01 1zin c.37.1.1 31915 g.41.2.1 45178 1o5kA 306 3.52e+01 c.1.10.1 -5482 1poa 118 3.57e+01 1poa a.133.1.2 19514 1faaA 124 3.62e+01 1erv c.47.1.1 32738 1oneA 436 3.63e+01 4enl c.1.11.1 29200 d.54.1.1 38844 1pmi 440 3.64e+01 1pmi b.82.1.3 28114 1vhwA 253 3.64e+01 c.56.2.1 -7765 1n7fA 97 3.68e+01 b.36.1.1 -3746 1dpjA 329 3.72e+01 1smrA b.50.1.2 26828 7odcA 424 3.74e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1eguA 731 3.76e+01 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.5.2 24423 1dfuP 94 3.80e+01 1dfuP b.53.1.1 26936 1o54A 277 3.81e+01 c.66.1.13 -8095 1lmiA 131 3.89e+01 b.1.19.1 78098 1whi 122 3.91e+01 1whi b.39.1.1 24810 4enl 436 3.98e+01 4enl c.1.11.1 29202 d.54.1.1 38846