# List of top-scoring protein chains for t04-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2dpmA 284 1.96e-01 2dpmA c.66.1.28 34246 1uxxX 133 2.89e-01 b.18.1.10 -3107 1d2eA 397 3.59e-01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1e0tA 470 4.99e-01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1uheA 97 5.51e-01 1gmmA 133 5.95e-01 b.18.1.10 65314 1fjgD 209 7.91e-01 1c05A d.66.1.2 39553 1qzzA 374 1.19e+00 a.4.5.29 -277 c.66.1.12 -8045 1p1cA 199 1.24e+00 c.66.1.16 87669 1jnyA 435 1.28e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1o9yA 84 1.29e+00 unknown_sccs -4105 1r13A 148 1.55e+00 d.169.1.1 -11646 h.1.1.1 -12895 1ndh 272 1.66e+00 1ndh b.43.4.2 25662 c.25.1.1 31552 1a49A 530 1.69e+00 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1izcA 339 1.98e+00 c.1.12.5 83838 1i7pA 274 1.98e+00 b.43.4.2 66048 c.25.1.1 66049 2plc 274 2.25e+00 2plc c.1.18.2 29614 1aonO 97 2.70e+00 b.35.1.1 24642 1p9kA 79 3.12e+00 unknown_sccs -10238 1cb0A 283 3.31e+00 1cb0A c.56.2.1 33790 1f60A 458 3.48e+00 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1r6xA 395 3.48e+00 b.122.1.3 -5125 c.26.1.5 -6620 1ixkA 315 3.61e+00 unknown_sccs -8099 1ejxC 567 4.08e+00 b.92.1.1 83184 c.1.9.2 83185 3ullA 132 4.83e+00 3ullA b.40.4.3 25282 1mxiA 160 4.84e+00 c.116.1.1 79646 1unkA 87 5.14e+00 1cei a.28.2.1 16935 1q1gA 276 5.47e+00 c.56.2.1 -7846 1o5uA 101 5.52e+00 b.82.1.8 -4845 1cei 94 5.69e+00 1cei a.28.2.1 16939 1enfA 212 5.88e+00 3seb b.40.2.2 25198 d.15.6.1 37787 1qcsA 211 6.17e+00 1qcsA b.52.2.3 26927 d.31.1.1 38461 1iz6A 138 6.19e+00 b.34.5.2 76976 b.40.4.5 76977 1exmA 405 6.54e+00 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1a8vA 121 6.86e+00 1a62 a.140.3.1 64712 b.40.4.5 64713 1ha3A 405 6.88e+00 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 4uagA 437 7.03e+00 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1g8fA 511 7.34e+00 1g8fA b.122.1.3 60348 c.26.1.5 60349 c.37.1.15 60350 1gkpA 458 7.52e+00 b.92.1.3 70231 c.1.9.6 70232 1khiA 176 7.60e+00 b.34.5.2 77408 b.40.4.5 77409 1uy4A 145 8.32e+00 1g38A 393 8.77e+00 2admA c.66.1.27 60235 1dm9A 133 8.98e+00 1dm9A d.66.1.3 39560 1bg6 359 9.04e+00 1bg6 a.100.1.5 18810 c.2.1.6 30214 1uzcA 71 9.23e+00 a.159.2.1 -339 1h0hA 977 9.38e+00 b.52.2.2 76435 c.81.1.1 76436 1oc2A 348 9.55e+00 c.2.1.2 -5753 4ubpC 570 9.70e+00 1ubpC b.92.1.1 28431 c.1.9.2 29053 1eu1A 780 1.01e+01 1dmr b.52.2.2 26903 c.81.1.1 35311 2napA 723 1.03e+01 2napA b.52.2.2 26926 c.81.1.1 35334 1kypA 237 1.04e+01 d.22.1.1 73280 2rslA 140 1.27e+01 2rslA c.53.1.1 33345 1kqfA 1015 1.28e+01 b.52.2.2 72871 c.81.1.1 72872 1rxyA 253 1.28e+01 c.56.2.1 -7834 1ema 236 1.31e+01 1ema d.22.1.1 38339 1lzjA 292 1.32e+01 c.68.1.9 74352 1odkA 235 1.36e+01 c.56.2.1 86863 1sb8A 352 1.38e+01 1vj0A 380 1.39e+01 b.35.1.2 -3697 c.2.1.1 -5721 1oruA 195 1.41e+01 unknown_sccs -4390 2cbp 96 1.42e+01 2cbp b.6.1.1 22895 1r61A 207 1.43e+01 unknown_sccs -6086 1te5A 257 1.43e+01 1paz 123 1.44e+01 1bqk b.6.1.1 22878 1cl1A 395 1.48e+01 1cl2A c.67.1.3 34395 1lylA 504 1.48e+01 1lylA b.40.4.1 25261 d.104.1.1 40717 1qf9A 194 1.50e+01 1zin c.37.1.1 31848 1kepA 348 1.53e+01 c.2.1.2 68536 1qisA 396 1.56e+01 1ajsA c.67.1.1 34284 1lx7A 253 1.58e+01 c.56.2.1 74329 5ukdA 194 1.60e+01 1zin c.37.1.1 31851 1aac 105 1.65e+01 1aac b.6.1.1 22838 1eljA 381 1.76e+01 4mbp c.94.1.1 35791 1oxdA 227 1.80e+01 d.22.1.1 -9438 1ars 396 1.81e+01 1ajsA c.67.1.1 34287 2arcA 164 1.82e+01 2arcA b.82.4.1 28148 1l5wA 796 1.97e+01 c.87.1.4 73605 1ahxA 396 2.01e+01 1ajsA c.67.1.1 34293 1mw7A 240 2.02e+01 e.39.1.1 79557 1t46A 313 2.08e+01 1e1oA 504 2.11e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1i1nA 226 2.21e+01 c.66.1.7 71102 1qwlA 505 2.22e+01 e.5.1.1 -11823 1kzlA 208 2.28e+01 b.43.4.3 77635 b.43.4.3 77636 1bqk 124 2.28e+01 1bqk b.6.1.1 22889 1eg3A 261 2.33e+01 1eg3A a.39.1.7 17376 a.39.1.7 17377 b.72.1.1 27805 1s6cA 183 2.36e+01 a.39.1.5 -858 1eemA 241 2.37e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 1o9gA 250 2.41e+01 c.66.1.29 86692 1bxaA 105 2.41e+01 1aac b.6.1.1 22839 5reqA 727 2.45e+01 1reqA c.1.19.1 29632 c.23.6.1 31259 1jg1A 235 2.52e+01 c.66.1.7 66661 1mjc 69 2.55e+01 1mjc b.40.4.5 25319 1dyr 206 2.68e+01 1aoeA c.71.1.1 34916 1reqA 727 2.70e+01 1reqA c.1.19.1 29620 c.23.6.1 31247 1ckaA 57 2.74e+01 1ckaA b.34.2.1 24459 1a8p 258 2.81e+01 1fdr b.43.4.2 25654 c.25.1.1 31544 1ct5A 256 2.82e+01 1ct5A c.1.6.2 28663 1nykA 165 2.84e+01 b.33.1.1 86408 1i8dA 213 2.84e+01 b.43.4.3 61953 b.43.4.3 61954 1tmy 120 2.87e+01 1dbwA c.23.1.1 31083 1o7iA 119 2.89e+01 b.40.4.3 86642 1k47A 337 2.90e+01 d.14.1.5 72040 d.58.26.4 72041 1a62 130 2.97e+01 1a62 a.140.3.1 64708 b.40.4.5 64709 2eifA 136 2.99e+01 1bkb b.34.5.2 24607 b.40.4.5 25339 1geqA 248 2.99e+01 2tysA c.1.2.4 28589 1mi3A 322 3.00e+01 c.1.7.1 -5257 1el5A 389 3.02e+01 1b3mA c.3.1.2 30369 d.16.1.3 37937 1gl4B 98 3.03e+01 b.1.1.4 65288 1bb9 115 3.07e+01 1bb9 b.34.2.1 24554 1q7lB 88 3.13e+01 1fgkA 310 3.23e+01 1fgkA d.144.1.7 41693 1v8cA 168 3.26e+01 d.15.3.1 -9175 unknown_sccs -11012 1gcqC 70 3.27e+01 1gcpA b.34.2.1 60436 1nw2A 105 3.36e+01 c.47.1.1 -7380 1aw8B 91 3.38e+01 1aw8B 1g8iA 190 3.42e+01 1rec a.39.1.5 60363 1jqbA 351 3.43e+01 b.35.1.2 77151 c.2.1.1 77152 1ja9A 274 3.43e+01 c.2.1.2 62817 1mg4A 113 3.44e+01 d.15.11.1 84953 1vhwA 253 3.46e+01 c.56.2.1 -7765 1g8kA 825 3.46e+01 1g8jA b.52.2.2 26920 c.81.1.1 35328 1qavA 90 3.53e+01 1qauA b.36.1.1 24777 1e4fT 419 3.57e+01 1e4fT c.55.1.1 33453 c.55.1.1 33454 1fjgQ 105 3.62e+01 1fjfQ b.40.4.5 25352 1jer 138 3.66e+01 2cbp b.6.1.1 23022 1q16A 1247 3.77e+01 b.52.2.2 -4337 c.81.1.1 -8547 1k0hA 117 3.79e+01 b.106.1.2 71975 1q0sA 259 3.80e+01 c.66.1.28 -8110 1hw1A 239 3.91e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1htrP 43 3.93e+01 1htrP b.50.1.2 26852 1je0A 236 3.93e+01 c.56.2.1 66581