# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1uheA	97	7.32e-01			
4ubpB	126	2.74e+00	1ubpB	b.85.3.1	28345
1uxxX	133	2.94e+00		b.18.1.10	-3107
1mv8A	436	4.22e+00		a.100.1.4	85128
				c.2.1.6	85129
				c.26.3.1	85130
1p9kA	79	4.48e+00		unknown_sccs	-10238
1gmmA	133	5.39e+00		b.18.1.10	65314
1r53A	382	6.53e+00		unknown_sccs	-11177
1ov3A	138	7.19e+00		b.34.2.1	87451
				b.34.2.1	87452
1r13A	148	8.26e+00		d.169.1.1	-11646
				h.1.1.1	-12895
1ejxB	101	8.38e+00		b.85.3.1	83183
2rslA	140	8.39e+00	2rslA	c.53.1.1	33345
1o5uA	101	8.86e+00		b.82.1.8	-4845
1ckv	141	8.96e+00	1ckv	d.137.1.1	41452
1c02A	166	9.77e+00	1qspA	a.24.10.2	16633
1oniA	137	9.95e+00		d.79.1.1	87144
1v8cA	168	1.09e+01		d.15.3.1	-9175
				unknown_sccs	-11012
1vh6A	145	1.15e+01		unknown_sccs	-617
1v5sA	126	1.23e+01			
1pvc1	301	1.24e+01	1pov1		
1eljA	381	1.32e+01	4mbp	c.94.1.1	35791
1v65A	64	1.79e+01			
1pzwA	80	1.85e+01		unknown_sccs	-12740
1dowA	205	1.99e+01	1dovA	a.24.9.1	16626
1mxiA	160	2.04e+01		c.116.1.1	79646
1qu9A	128	2.08e+01	1qu9A	d.79.1.1	39755
1hjrA	158	2.36e+01	1hjrA	c.55.3.6	33727
1fc4A	401	2.38e+01	1bs0A	c.67.1.4	59760
1k66A	149	2.41e+01		c.23.1.1	-6406
1tc1A	220	2.46e+01	1tc1A	c.61.1.1	34083
1fl0A	171	2.65e+01	1eujA	b.40.4.4	25315
1gcqC	70	2.96e+01	1gcpA	b.34.2.1	60436
1db3A	372	3.12e+01	1db3A	c.2.1.2	29813
1bb9	115	3.14e+01	1bb9	b.34.2.1	24554
1qahA	136	3.26e+01		d.79.1.1	-10377
1ckaA	57	3.34e+01	1ckaA	b.34.2.1	24459
1m5q1	130	3.65e+01			
1zymA	258	3.73e+01	1zymA	a.60.10.1	18110
				c.8.1.2	30705
1tuc	63	3.74e+01	1tuc	b.34.2.1	24492
1ejrB	101	3.80e+01	1ubpB	b.85.3.1	28320
1v32A	101	3.81e+01		a.42.1.1	-912
3htsB	102	3.91e+01	2hts	a.4.5.22	16175