# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1t62A 166 7.33e-03 1ky3A 182 1.52e+00 c.37.1.8 73193 1i7kA 179 2.79e+00 1u9aA d.20.1.1 61889 1o58A 303 5.96e+00 c.79.1.1 -8503 1omzA 293 6.02e+00 c.68.1.15 87093 2sns 149 6.03e+00 1snc b.40.1.1 24860 1j6nA 303 6.06e+00 1xgsA 295 6.69e+00 1bn5 a.4.5.25 16216 d.127.1.1 41153 3erk 364 7.11e+00 1hcl d.144.1.7 41654 1v2bA 177 7.22e+00 1khiA 176 7.35e+00 b.34.5.2 77408 b.40.4.5 77409 1devC 196 7.70e+00 1ygs b.26.1.1 23915 1bco 327 7.92e+00 1bco b.48.1.1 26431 c.55.3.3 33676 1i1kA 309 7.96e+00 1daaA e.17.1.1 61533 1mwvA 714 8.57e+00 a.93.1.3 85161 a.93.1.3 85162 1qd6C 240 8.62e+00 1qd5A 1usrA 454 8.86e+00 b.68.1.1 -4569 1irqA 71 9.80e+00 unknown_sccs 66297 1khxA 227 1.15e+01 b.26.1.1 68631 1qd5A 275 1.17e+01 1qd5A f.4.2.1 43748 1mrzA 293 1.17e+01 b.43.5.1 -4048 c.26.1.3 -6616 1snc 149 1.19e+01 1snc b.40.1.1 24813 1f3aA 222 1.19e+01 1pgtA a.45.1.1 17701 c.47.1.5 32995 1e8uA 454 1.27e+01 1e8tA b.68.1.1 59389 1ey4A 149 1.46e+01 1snc b.40.1.1 24815 1qxyA 252 1.59e+01 d.127.1.1 -10993 1gseA 221 1.63e+01 1pgtA a.45.1.1 17667 c.47.1.5 32961 1k3lA 221 1.63e+01 a.45.1.1 77229 c.47.1.5 77230 1k3yA 221 1.63e+01 a.45.1.1 77245 c.47.1.5 77246 1pyp 285 1.72e+01 1wgjA b.40.5.1 25409 1gk1B 522 1.72e+01 1iyeA 309 1.74e+01 e.17.1.1 83786 1db3A 372 1.84e+01 1db3A c.2.1.2 29813 1mdc 133 1.92e+01 1hmt b.60.1.2 27198 1pueE 89 1.98e+01 1awcA a.4.5.21 16165 1ib8A 164 1.99e+01 b.38.2.1 71168 d.52.4.1 71169 1a3gA 308 1.99e+01 1daaA e.17.1.1 43286 1fzyA 149 2.02e+01 d.20.1.1 65072 1rl6A 177 2.02e+01 1rl6A d.141.1.1 41473 d.141.1.1 41474 1k2xB 143 2.14e+01 1fxtA 149 2.14e+01 d.20.1.1 65055 1py5A 326 2.34e+01 1dm9A 133 2.34e+01 1dm9A d.66.1.3 39560 1k0eA 453 2.36e+01 d.161.1.1 67938 1e8tA 454 2.56e+01 1e8tA b.68.1.1 59387 1xnaA 183 2.57e+01 1xnaA b.18.1.8 23773 1v38A 78 2.65e+01 a.60.1.2 -1016 1iw7C 1119 2.69e+01 e.29.1.1 71474 1fm2B 520 2.77e+01 1fm2B 1r6lA 239 2.78e+01 d.14.1.4 -9057 d.101.1.1 -10747 1rypC 244 2.89e+01 1rypC d.153.1.4 41934 1iujA 106 2.89e+01 unknown_sccs -9953 1k0gA 453 2.91e+01 d.161.1.1 67940 1sty 150 2.91e+01 1snc b.40.1.1 24812 1g5gB 481 2.92e+01 f.12.1.1 65157 h.3.2.1 65158 1fjgQ 105 2.98e+01 1fjfQ b.40.4.5 25352 1k8kD 300 2.99e+01 d.198.2.1 68309 d.198.2.1 68310 1ov3A 138 3.01e+01 b.34.2.1 87451 b.34.2.1 87452 1qq5A 253 3.08e+01 1qq5A c.108.1.1 43327 1kamA 194 3.10e+01 c.26.1.3 72254 1jokA 149 3.11e+01 1snc b.40.1.1 63214 1olgA 42 3.12e+01 1olgA a.53.1.1 17835 1qq7A 253 3.14e+01 1qq5A c.108.1.1 43329 1pk6C 129 3.16e+01 b.22.1.1 -3293 1kxoA 184 3.16e+01 b.60.1.1 84475 1su4A 994 3.22e+01 b.82.7.1 -4927 c.108.1.7 -6854 d.220.1.1 -11668 f.33.1.1 -12333 1of5B 184 3.47e+01 d.17.4.2 86934 1nscA 390 3.53e+01 2qwc b.68.1.1 27591 1j54A 186 3.75e+01 c.55.3.5 77077 1qb7A 236 3.75e+01 1qb7A c.61.1.1 34087 1pl8A 356 3.77e+01 b.35.1.2 -3716 c.2.1.1 -5740 1oqcA 125 3.79e+01 a.24.15.1 87264 1eqcA 394 3.85e+01 1cz1A c.1.8.3 28811 1cz1A 394 3.94e+01 1cz1A c.1.8.3 28839