CreatePredAlphaCost pred_alpha2k alpha11 T0212.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0212.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 6 dry8 5 dry12 2 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 20  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 10 \
	hbond_geom 0.1 \
	hbond_geom_backbone 0.1 \
	hbond_geom_beta 0.8 \
	hbond_geom_beta_pair 1

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	ssbond, hbond, or just arbitrary pairs of atoms.

StrandConstraint	S7	T14	0.661
StrandConstraint	K27	N38	0.611
StrandConstraint	Q42	D55	0.623
StrandConstraint	K59	E71	0.635
StrandConstraint	P73	P77	0.633
StrandConstraint	Y81	T84	0.784
StrandConstraint	T87	L89	0.856
StrandConstraint	I95	S104	0.693
StrandConstraint	H109	I114	0.782

SheetConstraint D25 I36		P92  Y81	hbond Y32	10

SheetConstraint A56 T54		K59  S61	hbond A56	3
SheetConstraint T54 E47		E62  V69	hbond I52	5

SheetConstraint A43 W51		V103 I95	hbond T99	3
SheetConstraint R9 I17		V103 I95	Hbond Y100	3

SheetConstraint H109 F117	I37 L29		Hbond S31	3

SheetConstraint H109 I114	K13 I8		Hbond N111	5
SheetConstraint	T99 S104	T14 R9		Hbond V10	5

# Sheetconstraint F30 I34		I114 F110	hbond T33	7
# Sheetconstraint H50 I53		G101 G98	hbond I53	4