# List of top-scoring protein chains for T0212.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rynA 202 1.34e+00 c.56.3.1 -7860 1rymA 212 1.61e+00 c.56.3.1 -7859 1uf2A 1019 1.72e+00 unknown_sccs -12036 1dsl 88 2.71e+00 1amm b.11.1.1 23591 1gamA 86 3.29e+00 1amm b.11.1.1 23594 22gsA 210 4.00e+00 1pgtA a.45.1.1 17542 c.47.1.5 32836 1drs 59 4.33e+00 3ebx g.7.1.2 44457 2ljrA 244 6.10e+00 1ljrA a.45.1.1 17709 c.47.1.5 33003 17gsA 210 6.34e+00 1pgtA a.45.1.1 17524 c.47.1.5 32818 1mbmA 198 6.37e+00 b.47.1.3 78916 1md3A 209 6.42e+00 a.45.1.1 74628 c.47.1.5 74629 1pgtA 210 6.53e+00 1pgtA a.45.1.1 17515 c.47.1.5 32809 1a5dA 173 6.60e+00 1amm b.11.1.1 23614 b.11.1.1 23615 1lbkA 208 6.62e+00 a.45.1.1 73809 c.47.1.5 73810 1eohA 209 6.62e+00 1pgtA a.45.1.1 17574 c.47.1.5 32868 1md4A 209 6.63e+00 a.45.1.1 74632 c.47.1.5 74633 1px6A 209 6.65e+00 a.45.1.1 88333 c.47.1.5 88334 1kbnA 209 6.69e+00 a.45.1.1 -926 c.47.1.5 -7451 1aqwA 209 6.69e+00 1pgtA a.45.1.1 17517 c.47.1.5 32811 1px7A 209 6.70e+00 a.45.1.1 88337 c.47.1.5 88338 1eogA 208 6.71e+00 1pgtA a.45.1.1 17560 c.47.1.5 32854 18gsA 210 6.74e+00 1pgtA a.45.1.1 17528 c.47.1.5 32822 1rybA 212 6.82e+00 c.56.3.1 -7858 4gssA 209 6.96e+00 1pgtA a.45.1.1 17570 c.47.1.5 32864 1mjdA 113 8.05e+00 d.15.11.1 84977 1hzjA 348 8.22e+00 1xel c.2.1.2 61450 1i3kA 348 8.22e+00 1xel c.2.1.2 61595 1axdA 209 9.02e+00 1gnwA a.45.1.1 17730 c.47.1.5 33024 1bs0A 384 9.07e+00 1bs0A c.67.1.4 34490 1byeA 213 9.14e+00 1gnwA a.45.1.1 17732 c.47.1.5 33026 1djeA 384 9.16e+00 1bs0A c.67.1.4 34491 1ek6A 348 9.38e+00 1xel c.2.1.2 29800 1a0xB 146 9.54e+00 1abwA a.1.1.2 15504 1elpA 173 1.09e+01 1amm b.11.1.1 23596 b.11.1.1 23597 1aorA 605 1.19e+01 1b25A a.110.1.1 19042 d.152.1.1 41794 9paiA 379 1.20e+01 1sek e.1.1.1 42667 1lj5A 379 1.21e+01 e.1.1.1 73928 1a7cA 379 1.21e+01 1sek e.1.1.1 42660 1aun 208 1.23e+01 1thv b.25.1.1 23900 1lqtA 456 1.24e+01 c.3.1.1 74198 c.4.1.1 74199 1c5gA 402 1.31e+01 1sek e.1.1.1 42661 1squA 155 1.32e+01 unknown_sccs -10229 1dxqA 273 1.45e+01 1d4aA c.23.5.3 31213 1edt 271 1.46e+01 2ebn c.1.8.5 28993 1c8yA 265 1.46e+01 2ebn c.1.8.5 28995 1c3fA 265 1.47e+01 2ebn c.1.8.5 28999 1c93A 265 1.47e+01 2ebn c.1.8.5 28998 1c90A 265 1.47e+01 2ebn c.1.8.5 28996 1c8xA 265 1.47e+01 2ebn c.1.8.5 28994 1c92A 265 1.48e+01 2ebn c.1.8.5 29001 1c91A 265 1.49e+01 2ebn c.1.8.5 29000 1at0 145 1.56e+01 1at0 b.86.1.1 28374 1o6zA 303 1.57e+01 c.2.1.5 81107 d.162.1.1 81108 1glqA 209 1.63e+01 1pgtA a.45.1.1 17588 c.47.1.5 32882 1d3aA 303 1.68e+01 1ceqA c.2.1.5 30143 d.162.1.1 42110 2hlpA 303 1.68e+01 1ceqA c.2.1.5 30141 d.162.1.1 42108 1i5iA 174 1.68e+01 1amm b.11.1.1 61786 b.11.1.1 61787 1kb9G 125 1.69e+01 f.27.1.1 77322 1kyoG 126 1.70e+01 f.27.1.1 73259 1amm 174 1.78e+01 1amm b.11.1.1 23587 b.11.1.1 23588 1f00I 282 2.02e+01 1f00I b.1.14.1 22368 b.1.14.1 22369 d.169.1.3 42439 1nwbA 124 2.11e+01 b.124.1.1 86296 1msk 331 2.16e+01 1msk d.173.1.1 42495 1s1iB 253 2.22e+01 1f89A 291 2.23e+01 d.160.1.1 64988 1e5uI 187 2.23e+01 1f00I b.1.14.1 22372 d.169.1.3 42441 1wwbX 103 2.40e+01 1wwcA b.1.1.4 21777 1v4tA 451 2.40e+01 c.55.1.3 -7606 c.55.1.3 -7607 1v4sA 455 2.41e+01 c.55.1.3 -7604 c.55.1.3 -7605 1re0B 221 2.65e+01 a.118.3.1 -1583 1hcfX 101 2.74e+01 b.1.1.4 65790 1oc0A 379 2.96e+01 e.1.1.1 86790 1rf6A 427 3.11e+01 d.68.2.2 -10314 3adk 195 3.15e+01 1zin c.37.1.1 31885 1b1a 137 3.18e+01 1be1 c.23.6.1 31242 1db2A 377 3.19e+01 1sek e.1.1.1 42672 1k7yA 577 3.23e+01 a.46.1.1 68272 c.23.6.1 68273 d.173.1.1 68274 1i9cA 137 3.25e+01 c.23.6.1 71136 1nb8A 353 3.29e+01 d.3.1.9 80385 1ccwA 137 3.34e+01 1be1 c.23.6.1 31238 4aig 201 3.36e+01 1atlA d.92.1.9 40318 1sjvA 114 3.49e+01 1iag 202 3.52e+01 1atlA d.92.1.9 40319 1fshA 105 3.54e+01 1fshA a.4.5.31 60006 1c5dA 213 3.56e+01 8fabA b.1.1.1 20414 b.1.1.2 21386 1p5uB 149 3.58e+01 b.2.3.2 87810 1p5vB 147 3.60e+01 b.2.3.2 87814 1krrA 203 3.73e+01 b.81.1.3 72899 1l8dA 112 3.91e+01 h.4.12.1 73687