# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wwbX 103 1.40e+00 1wwcA b.1.1.4 21777 1lqtA 456 2.98e+00 c.3.1.1 74198 c.4.1.1 74199 1who 96 4.08e+00 1who b.7.3.1 23215 1qreA 247 4.79e+00 1qreA b.81.1.5 28066 1thjA 214 5.44e+00 1qreA b.81.1.5 28072 1bu8A 452 6.62e+00 1gpl b.12.1.2 23647 c.69.1.19 34795 1o91A 178 7.61e+00 b.22.1.1 -3282 1fnlA 175 8.32e+00 2fcbA b.1.1.4 21783 b.1.1.4 21784 1mjuL 219 9.56e+00 b.1.1.1 -2083 b.1.1.2 -2360 1h8gA 95 9.59e+00 b.109.1.1 65735 1gnhA 206 1.06e+01 1sacA b.29.1.5 24252 1cqyA 99 1.08e+01 1b9zA b.3.1.1 22527 1v4sA 455 1.09e+01 c.55.1.3 -7604 c.55.1.3 -7605 1hcxA 127 1.18e+01 b.109.1.1 65800 1gvmA 136 1.18e+01 b.109.1.1 70612 1vavA 222 1.20e+01 1qrkA 731 1.27e+01 1f13A b.1.18.9 21889 b.1.5.1 22187 b.1.5.1 22188 d.3.1.4 37119 1hq0A 295 1.28e+01 1hzgA d.194.1.1 61122 5bcaA 516 1.33e+01 1b9zA b.3.1.1 22529 c.1.8.1 28799 1b9zA 516 1.33e+01 1b9zA b.3.1.1 22528 c.1.8.1 28798 1hzgA 295 1.33e+01 1hzgA d.194.1.1 61436 1drs 59 1.40e+01 3ebx g.7.1.2 44457 1aun 208 1.50e+01 1thv b.25.1.1 23900 1bhgA 613 1.82e+01 1bhgA b.1.4.1 22161 b.18.1.5 23766 c.1.8.3 28889 1vcbC 160 2.03e+01 1vcbC b.3.3.1 22535 1c28A 135 2.10e+01 1c28A b.22.1.1 23857 1noa 113 2.13e+01 2mcm b.1.7.1 22208 1lqbC 162 2.17e+01 b.3.3.1 74186 1mspA 126 2.27e+01 1mspA b.1.11.2 22333 1cqqA 180 2.29e+01 1cqqA b.47.1.4 26422 1jv4A 162 2.32e+01 b.60.1.1 67343 2emo 237 2.36e+01 1ema d.22.1.1 38366 1aizA 129 2.39e+01 1nwpA b.6.1.1 22903 1pjjA 271 2.40e+01 1nnjA 271 2.41e+01 a.156.1.2 80669 b.113.1.1 80670 g.39.1.8 80671 1lm8V 160 2.48e+01 b.3.3.1 74035 1gr3A 160 2.50e+01 b.22.1.1 65476 1q72L 218 2.57e+01 b.1.1.1 -2071 b.1.1.2 -2347 1oxdA 227 2.64e+01 d.22.1.1 -9438 1qfhA 212 2.71e+01 1qfhA b.1.18.10 21893 b.1.18.10 21894 1qmvA 197 2.72e+01 1qq2A c.47.1.10 33066 1ig8A 486 2.81e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1qniA 581 2.90e+01 1qniA b.6.1.4 23042 b.69.3.1 27642 1h3nA 878 2.92e+01 a.27.1.1 76641 b.51.1.1 76642 c.26.1.1 76643 1qg0A 308 2.98e+01 1fnc b.43.4.2 25639 c.25.1.1 31529 1amx 180 3.01e+01 1amx b.2.3.1 22410 1jb9A 316 3.09e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 1of4A 179 3.12e+01 b.18.1.18 86932 2azaA 129 3.14e+01 1nwpA b.6.1.1 22901 1h6rA 236 3.14e+01 d.22.1.1 65683 1iznB 277 3.15e+01 e.43.1.2 83848 3mspA 126 3.16e+01 1mspA b.1.11.2 22343 1e5uI 187 3.23e+01 1f00I b.1.14.1 22372 d.169.1.3 42441 1ni9A 338 3.25e+01 e.7.1.2 85739 1c3hA 137 3.25e+01 b.22.1.1 -3255 1f00I 282 3.29e+01 1f00I b.1.14.1 22368 b.1.14.1 22369 d.169.1.3 42439 1memA 215 3.33e+01 1cs8A d.3.1.1 37069 1gpl 432 3.34e+01 1gpl b.12.1.2 23645 c.69.1.19 34793 1i06A 180 3.35e+01 1mup b.60.1.1 27131 1ri6A 343 3.39e+01 unknown_sccs -4621 1qq2A 199 3.41e+01 1qq2A c.47.1.10 33064 1oh4A 179 3.42e+01 b.18.1.18 -3123 1h6hA 143 3.51e+01 d.189.1.1 65681 1icjA 168 3.53e+01 1bs4A d.167.1.1 42284 1kypA 237 3.54e+01 d.22.1.1 73280 1ema 236 3.57e+01 1ema d.22.1.1 38339 3psg 370 3.57e+01 1smrA b.50.1.2 26841 2madH 373 3.64e+01 2bbkH b.69.2.1 27639 1i05A 180 3.65e+01 1mup b.60.1.1 27130 1qy1A 174 3.71e+01 b.60.1.1 -4445 1bs4A 168 3.71e+01 1bs4A d.167.1.1 42287 1itcA 516 3.77e+01 b.3.1.1 83705 c.1.8.1 83706 1p49A 562 3.79e+01 c.76.1.2 -8432 1mup 166 3.80e+01 1mup b.60.1.1 27133 1acx 108 3.83e+01 2mcm b.1.7.1 22211 1tl2A 236 3.83e+01 1tl2A b.67.1.1 27541 1bsjA 168 3.85e+01 1bs4A d.167.1.1 42302 1c5kA 439 3.85e+01 1crzA b.68.4.1 27630 c.51.2.1 33212 1et9A 204 3.88e+01 1an8 b.40.2.2 25204 d.15.6.1 37793 1evuA 731 3.90e+01 1f13A b.1.18.9 21883 b.1.5.1 22175 b.1.5.1 22176 d.3.1.4 37113 1ollA 188 3.94e+01 b.1.1.4 -2690 b.1.1.4 -2691 1befA 181 3.95e+01 1befA b.47.1.3 26419 1aac 105 3.97e+01 1aac b.6.1.1 22838