# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lqtA 456 1.50e-01 c.3.1.1 74198 c.4.1.1 74199 1wwbX 103 2.89e-01 1wwcA b.1.1.4 21777 1nwbA 124 7.88e-01 b.124.1.1 86296 1h6hA 143 9.64e-01 d.189.1.1 65681 1drs 59 1.69e+00 3ebx g.7.1.2 44457 1awcA 110 2.17e+00 1awcA a.4.5.21 16167 1fyhB 229 2.78e+00 1jrhI b.1.2.1 22055 b.1.2.1 22056 1pgtA 210 3.09e+00 1pgtA a.45.1.1 17515 c.47.1.5 32809 1wwcA 118 3.34e+00 1wwcA b.1.1.4 21778 1h8gA 95 3.78e+00 b.109.1.1 65735 1qk9A 92 3.86e+00 1qk9A d.10.1.3 37485 1ngmB 72 3.99e+00 j.104.1.1 85687 1k92A 455 4.05e+00 c.26.2.1 68325 d.210.1.1 68326 1p97A 114 5.69e+00 unknown_sccs -10844 1kexA 155 5.94e+00 b.18.1.2 77350 1pcfA 66 6.12e+00 1pcfA d.18.1.1 38142 1fg9C 245 6.16e+00 1jrhI b.1.2.1 22060 b.1.2.1 22061 1grj 158 7.61e+00 1grj a.2.1.1 15691 d.26.1.2 38433 1gvmA 136 7.86e+00 b.109.1.1 70612 1fi2A 201 8.93e+00 1fi2A b.82.1.2 59845 1g6zA 70 9.12e+00 1g6zA b.34.13.2 60321 1vhoA 346 9.28e+00 unknown_sccs -4283 c.56.5.4 -7893 1hcxA 127 9.85e+00 b.109.1.1 65800 3aig 202 1.02e+01 1atlA d.92.1.9 40321 1uebA 184 1.13e+01 1kn7A 78 1.15e+01 j.12.1.1 84413 1dokA 77 1.24e+01 1dokA d.9.1.1 37420 1f6fB 210 1.26e+01 1axiB b.1.2.1 22033 b.1.2.1 22034 3ullA 132 1.38e+01 3ullA b.40.4.3 25282 3kinB 117 1.65e+01 3kinB 1kkdA 102 1.69e+01 f.15.1.1 68668 1ub1A 133 1.71e+01 d.10.1.3 -8969 1bbl 51 1.72e+01 1bbl a.9.1.1 16356 1f2lA 76 1.86e+01 1dokA d.9.1.1 37436 1pc6A 146 1.97e+01 unknown_sccs -11739 1e3aB 560 1.98e+01 1ajqB 1gkfB 557 2.08e+01 1etc 110 2.11e+01 1awcA a.4.5.21 16162 1gk9B 557 2.11e+01 1gm7B 557 2.12e+01 1ml0D 76 2.12e+01 d.9.1.1 79254 1mjuL 219 2.17e+01 b.1.1.1 -2083 b.1.1.2 -2360 1g4yB 101 2.22e+01 1g4yB f.15.1.1 60251 1who 96 2.35e+01 1who b.7.3.1 23215 1gcmA 34 2.35e+01 1ce0A h.1.3.1 45476 1bmw 96 2.36e+01 1who b.7.3.1 23217 1gm9B 557 2.37e+01 1b56 135 2.46e+01 1hmt b.60.1.2 27183 1js1X 324 2.56e+01 c.78.1.1 71834 c.78.1.1 71835 1o91A 178 2.65e+01 b.22.1.1 -3282 1a7cA 379 2.67e+01 1sek e.1.1.1 42660 1i8tA 367 2.74e+01 c.4.1.3 66094 d.16.1.7 66095 2camA 127 2.78e+01 1swuA b.61.1.1 27407 1ajqB 557 2.79e+01 1ajqB 1f5fA 205 2.84e+01 1d2sA b.29.1.4 24222 1k3eA 156 2.85e+01 d.198.1.1 68103 1ziiA 34 2.90e+01 2ztaA h.1.3.1 45479 1ce9A 34 2.93e+01 1ce9C h.1.3.1 45483 1ce9C 34 2.93e+01 1ce9C h.1.3.1 45485 1bp3B 211 2.97e+01 1axiB b.1.2.1 22031 b.1.2.1 22032 1jhnA 424 3.05e+01 b.29.1.12 70060 b.104.1.1 66722 1i6uA 130 3.17e+01 d.140.1.1 61850 1lcjA 109 3.22e+01 1qadA d.93.1.1 40414 2ztaA 34 3.32e+01 2ztaA h.1.3.1 45474 1pnkB 557 3.45e+01 1ajqB 1rhfA 182 3.52e+01 b.1.1.1 -2335 b.1.1.4 -2684 1or7A 194 3.52e+01 a.4.13.2 87332 a.177.1.1 87333 1inlA 296 3.56e+01 c.66.1.17 66220 1cqyA 99 3.84e+01 1b9zA b.3.1.1 22527 1uxxX 133 3.84e+01 b.18.1.10 -3107