# List of top-scoring protein chains for T0212.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uf2A 1019 4.23e+00 2ljrA 244 4.35e+00 1ljrA a.45.1.1 17709 c.47.1.5 33003 1dsl 88 4.39e+00 1amm b.11.1.1 23591 1rynA 202 4.50e+00 1gamA 86 5.33e+00 1amm b.11.1.1 23594 1rymA 212 5.59e+00 22gsA 210 6.82e+00 1pgtA a.45.1.1 17542 c.47.1.5 32836 1drs 59 7.44e+00 3ebx g.7.1.2 44457 1lqtA 456 7.49e+00 c.3.1.1 74198 c.4.1.1 74199 1a5dA 173 8.05e+00 1amm b.11.1.1 23614 b.11.1.1 23615 1dxqA 273 1.01e+01 1d4aA c.23.5.3 31213 1md3A 209 1.02e+01 a.45.1.1 74628 c.47.1.5 74629 17gsA 210 1.02e+01 1pgtA a.45.1.1 17524 c.47.1.5 32818 1md4A 209 1.02e+01 a.45.1.1 74632 c.47.1.5 74633 1pgtA 210 1.03e+01 1pgtA a.45.1.1 17515 c.47.1.5 32809 1eohA 209 1.04e+01 1pgtA a.45.1.1 17574 c.47.1.5 32868 1lbkA 208 1.05e+01 a.45.1.1 73809 c.47.1.5 73810 1kbnA 209 1.05e+01 1px6A 209 1.05e+01 a.45.1.1 88333 c.47.1.5 88334 1px7A 209 1.06e+01 a.45.1.1 88337 c.47.1.5 88338 1eogA 208 1.06e+01 1pgtA a.45.1.1 17560 c.47.1.5 32854 1aqwA 209 1.06e+01 1pgtA a.45.1.1 17517 c.47.1.5 32811 18gsA 210 1.06e+01 1pgtA a.45.1.1 17528 c.47.1.5 32822 4gssA 209 1.09e+01 1pgtA a.45.1.1 17570 c.47.1.5 32864 1i3kA 348 1.25e+01 1xel c.2.1.2 61595 1hzjA 348 1.25e+01 1xel c.2.1.2 61450 1elpA 173 1.26e+01 1amm b.11.1.1 23596 b.11.1.1 23597 1mbmA 198 1.35e+01 b.47.1.3 78916 1axdA 209 1.35e+01 1gnwA a.45.1.1 17730 c.47.1.5 33024 1byeA 213 1.36e+01 1gnwA a.45.1.1 17732 c.47.1.5 33026 1ek6A 348 1.38e+01 1xel c.2.1.2 29800 1aorA 605 1.68e+01 1b25A a.110.1.1 19042 d.152.1.1 41794 1squA 155 1.69e+01 1rybA 212 1.91e+01 1aun 208 1.94e+01 1thv b.25.1.1 23900 1mjdA 113 1.99e+01 d.15.11.1 84977 1bs0A 384 2.05e+01 1bs0A c.67.1.4 34490 1djeA 384 2.08e+01 1bs0A c.67.1.4 34491 1o6zA 303 2.09e+01 c.2.1.5 81107 d.162.1.1 81108 1i5iA 174 2.16e+01 1amm b.11.1.1 61786 b.11.1.1 61787 1edt 271 2.18e+01 2ebn c.1.8.5 28993 1c8yA 265 2.21e+01 2ebn c.1.8.5 28995 1c3fA 265 2.22e+01 2ebn c.1.8.5 28999 1amm 174 2.22e+01 1amm b.11.1.1 23587 b.11.1.1 23588 1c90A 265 2.22e+01 2ebn c.1.8.5 28996 1c93A 265 2.22e+01 2ebn c.1.8.5 28998 1c8xA 265 2.22e+01 2ebn c.1.8.5 28994 1c92A 265 2.23e+01 2ebn c.1.8.5 29001 1c91A 265 2.24e+01 2ebn c.1.8.5 29000 2hlpA 303 2.26e+01 1ceqA c.2.1.5 30141 d.162.1.1 42108 1d3aA 303 2.26e+01 1ceqA c.2.1.5 30143 d.162.1.1 42110 1glqA 209 2.27e+01 1pgtA a.45.1.1 17588 c.47.1.5 32882 1kb9G 125 2.50e+01 f.27.1.1 77322 1kyoG 126 2.52e+01 f.27.1.1 73259 1a0xB 146 2.95e+01 1abwA a.1.1.2 15504 1dwmA 70 3.12e+01 1hymA d.40.1.1 38583 1v4tA 451 3.18e+01 1v4sA 455 3.20e+01 1fshA 105 3.35e+01 1fshA a.4.5.31 60006 1uf2K 506 3.35e+01 1f89A 291 3.40e+01 d.160.1.1 64988 1eljA 381 3.48e+01 4mbp c.94.1.1 35791 1f00I 282 3.52e+01 1f00I b.1.14.1 22368 b.1.14.1 22369 d.169.1.3 42439 1wwbX 103 3.62e+01 1wwcA b.1.1.4 21777 1nxmA 197 3.65e+01 b.82.1.1 86385 1e5uI 187 3.69e+01 1f00I b.1.14.1 22372 d.169.1.3 42441 1grj 158 3.88e+01 1grj a.2.1.1 15691 d.26.1.2 38433 1hcfX 101 3.93e+01 b.1.1.4 65790