# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ikpA 613 1.76e+00 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 1tl2A 236 2.72e+00 1tl2A b.67.1.1 27541 1thjA 214 3.12e+00 1qreA b.81.1.5 28072 1i9gA 280 3.93e+00 c.66.1.13 62090 1lqtA 456 5.12e+00 c.3.1.1 74198 c.4.1.1 74199 1cqqA 180 5.64e+00 1cqqA b.47.1.4 26422 1qreA 247 5.71e+00 1qreA b.81.1.5 28066 2madH 373 7.19e+00 2bbkH b.69.2.1 27639 1of4A 179 7.38e+00 b.18.1.18 86932 1oh4A 179 7.53e+00 1jv4A 162 7.76e+00 b.60.1.1 67343 1o91A 178 8.22e+00 1who 96 8.35e+00 1who b.7.3.1 23215 1r4kA 169 8.37e+00 1vavA 222 8.73e+00 1s1dA 331 8.77e+00 1itcA 516 9.43e+00 b.3.1.1 83705 c.1.8.1 83706 1qy1A 174 9.46e+00 1i4uA 181 9.55e+00 b.60.1.1 61732 1i06A 180 9.91e+00 1mup b.60.1.1 27131 1i05A 180 9.91e+00 1mup b.60.1.1 27130 1mspA 126 1.06e+01 1mspA b.1.11.2 22333 1lm8V 160 1.08e+01 b.3.3.1 74035 1vcbC 160 1.12e+01 1vcbC b.3.3.1 22535 1jb9A 316 1.15e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 1cqyA 99 1.20e+01 1b9zA b.3.1.1 22527 1mjuL 219 1.24e+01 1befA 181 1.27e+01 1befA b.47.1.3 26419 1bu8A 452 1.42e+01 1gpl b.12.1.2 23647 c.69.1.19 34795 1ii7A 333 1.56e+01 1ii7A d.159.1.4 62415 1h3nA 878 1.59e+01 a.27.1.1 76641 b.51.1.1 76642 c.26.1.1 76643 1bi5A 389 1.84e+01 1bi5A c.95.1.2 35985 c.95.1.2 35986 1mup 166 1.91e+01 1mup b.60.1.1 27133 1uz5A 402 1.92e+01 1v4sA 455 1.94e+01 1hlrA 907 1.94e+01 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1jb7A 495 2.01e+01 1otcA b.40.4.3 62836 b.40.4.3 62837 b.40.4.3 62838 1j5wA 298 2.02e+01 d.104.1.1 71589 1noa 113 2.12e+01 2mcm b.1.7.1 22208 1pj5A 830 2.13e+01 1alo 907 2.23e+01 1alo 1d2sA 170 2.26e+01 1d2sA b.29.1.4 24221 1gpl 432 2.32e+01 1gpl b.12.1.2 23645 c.69.1.19 34793 2bbkH 355 2.33e+01 2bbkH b.69.2.1 27634 2azaA 129 2.33e+01 1nwpA b.6.1.1 22901 1go3E 187 2.40e+01 b.40.4.5 83054 d.230.1.1 83055 1jguH 217 2.46e+01 b.1.1.1 66688 b.1.1.2 66689 1pjjA 271 2.50e+01 1nnjA 271 2.50e+01 a.156.1.2 80669 b.113.1.1 80670 g.39.1.8 80671 2mspA 126 2.53e+01 1mspA b.1.11.2 22335 1qipA 183 2.55e+01 1qipA d.32.1.1 38470 1j1tA 233 2.55e+01 1aun 208 2.55e+01 1thv b.25.1.1 23900 1ig8A 486 2.73e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1qmvA 197 2.93e+01 1qq2A c.47.1.10 33066 1gr3A 160 2.98e+01 b.22.1.1 65476 1dlfH 124 3.01e+01 1igtB b.1.1.1 20383 1feuA 206 3.04e+01 1feuA b.53.1.1 59801 1r6wA 322 3.05e+01 1czyA 168 3.06e+01 1d0aB b.8.1.1 23220 h.1.2.1 45427 1ihkA 174 3.14e+01 1bfg b.42.1.1 62384 1oxdA 227 3.32e+01 4pep 326 3.43e+01 1smrA b.50.1.2 26843 1a7cA 379 3.47e+01 1sek e.1.1.1 42660 1f39A 101 3.61e+01 1umuA b.87.1.1 28386 1qg7A 67 3.66e+01 1a15A d.9.1.1 37449 1j9lA 247 3.68e+01 c.106.1.1 62762 5croA 66 3.72e+01 1orc a.35.1.2 17044 1l0qA 391 3.75e+01 b.1.3.1 77644 b.69.2.3 77645 1gt1A 159 3.75e+01 1j48A 110 3.76e+01 b.1.7.1 84112 1p3dA 475 3.80e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1kypA 237 3.83e+01 d.22.1.1 73280 1f5fA 205 3.95e+01 1d2sA b.29.1.4 24222 1m1hA 248 3.96e+01 b.114.1.1 78415 d.58.42.1 78416