# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lqtA 456 1.31e+00 c.3.1.1 74198 c.4.1.1 74199 1qreA 247 2.62e+00 1qreA b.81.1.5 28066 1thjA 214 2.79e+00 1qreA b.81.1.5 28072 1o91A 178 4.45e+00 1who 96 4.55e+00 1who b.7.3.1 23215 1cqyA 99 5.86e+00 1b9zA b.3.1.1 22527 1v4sA 455 6.79e+00 1vavA 222 8.51e+00 1tl2A 236 9.76e+00 1tl2A b.67.1.1 27541 1jb9A 316 9.96e+00 1fnc b.43.4.2 62840 c.25.1.1 62841 1mjuL 219 1.08e+01 1fnlA 175 1.13e+01 2fcbA b.1.1.4 21783 b.1.1.4 21784 1mspA 126 1.47e+01 1mspA b.1.11.2 22333 1cqqA 180 1.47e+01 1cqqA b.47.1.4 26422 1bu8A 452 1.48e+01 1gpl b.12.1.2 23647 c.69.1.19 34795 1aun 208 1.54e+01 1thv b.25.1.1 23900 1n7vA 555 1.92e+01 b.126.1.1 85377 1qouA 181 1.95e+01 1qouA b.17.1.1 23707 1feuA 206 2.00e+01 1feuA b.53.1.1 59801 1oxdA 227 2.06e+01 1noa 113 2.19e+01 2mcm b.1.7.1 22208 1ig8A 486 2.29e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1jv4A 162 2.32e+01 b.60.1.1 67343 1itcA 516 2.46e+01 b.3.1.1 83705 c.1.8.1 83706 1qniA 581 2.51e+01 1qniA b.6.1.4 23042 b.69.3.1 27642 1d2sA 170 2.64e+01 1d2sA b.29.1.4 24221 1befA 181 2.69e+01 1befA b.47.1.3 26419 1hlrA 907 2.72e+01 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1gpl 432 2.72e+01 1gpl b.12.1.2 23645 c.69.1.19 34793 1gr3A 160 2.75e+01 b.22.1.1 65476 1nnjA 271 2.78e+01 a.156.1.2 80669 b.113.1.1 80670 g.39.1.8 80671 1pjjA 271 2.78e+01 1kypA 237 2.86e+01 d.22.1.1 73280 1ii7A 333 2.91e+01 1ii7A d.159.1.4 62415 1qmvA 197 2.95e+01 1qq2A c.47.1.10 33066 1f5fA 205 2.98e+01 1d2sA b.29.1.4 24222 1memA 215 2.99e+01 1cs8A d.3.1.1 37069 1h3nA 878 3.15e+01 a.27.1.1 76641 b.51.1.1 76642 c.26.1.1 76643 1lgpA 116 3.21e+01 b.26.1.2 73890 1alo 907 3.25e+01 1alo 1i06A 180 3.27e+01 1mup b.60.1.1 27131 1evuA 731 3.32e+01 1f13A b.1.18.9 21883 b.1.5.1 22175 b.1.5.1 22176 d.3.1.4 37113 1ex0A 731 3.32e+01 3ullA 132 3.32e+01 3ullA b.40.4.3 25282 1pk6C 129 3.41e+01 1of4A 179 3.41e+01 b.18.1.18 86932 1grj 158 3.60e+01 1grj a.2.1.1 15691 d.26.1.2 38433 1uebA 184 3.60e+01 1qy1A 174 3.65e+01 1o7sA 127 3.66e+01 b.1.1.1 86644 1j5wA 298 3.67e+01 d.104.1.1 71589 1hq0A 295 3.71e+01 1hzgA d.194.1.1 61122 1oh4A 179 3.73e+01 1ni9A 338 3.77e+01 e.7.1.2 85739 1i05A 180 3.83e+01 1mup b.60.1.1 27130