# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lqtA 456 7.72e-01 c.3.1.1 74198 c.4.1.1 74199 1tl2A 236 2.15e+00 1tl2A b.67.1.1 27541 1who 96 2.96e+00 1who b.7.3.1 23215 1o91A 178 3.48e+00 1qreA 247 4.35e+00 1qreA b.81.1.5 28066 1cqqA 180 5.15e+00 1cqqA b.47.1.4 26422 1thjA 214 5.55e+00 1qreA b.81.1.5 28072 1jv4A 162 6.12e+00 b.60.1.1 67343 1l1jA 239 6.50e+00 b.47.1.1 84516 1gpl 432 6.87e+00 1gpl b.12.1.2 23645 c.69.1.19 34793 1qouA 181 7.33e+00 1qouA b.17.1.1 23707 1f6fB 210 7.50e+00 1axiB b.1.2.1 22033 b.1.2.1 22034 1e5pA 151 7.62e+00 1bj7 b.60.1.1 59272 1bu8A 452 8.11e+00 1gpl b.12.1.2 23647 c.69.1.19 34795 1qy1A 174 8.79e+00 1oxdA 227 8.82e+00 1i05A 180 8.85e+00 1mup b.60.1.1 27130 1i06A 180 8.95e+00 1mup b.60.1.1 27131 1mjuL 219 9.15e+00 1hlrA 907 9.41e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1kypA 237 9.48e+00 d.22.1.1 73280 1jb9A 316 9.91e+00 1fnc b.43.4.2 62840 c.25.1.1 62841 1noa 113 9.98e+00 2mcm b.1.7.1 22208 1alo 907 1.03e+01 1alo 1v4sA 455 1.05e+01 1aun 208 1.09e+01 1thv b.25.1.1 23900 1d2sA 170 1.11e+01 1d2sA b.29.1.4 24221 1of4A 179 1.17e+01 b.18.1.18 86932 1f5fA 205 1.25e+01 1d2sA b.29.1.4 24222 1ema 236 1.33e+01 1ema d.22.1.1 38339 1evfA 264 1.41e+01 1bkpA d.117.1.1 40932 1oh4A 179 1.42e+01 1qqqA 264 1.48e+01 1bkpA d.117.1.1 40931 1ikpA 613 1.49e+01 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 1lktA 104 1.50e+01 1lktA b.90.1.1 28398 1pbyB 337 1.51e+01 1befA 181 1.52e+01 1befA b.47.1.3 26419 1j5wA 298 1.53e+01 d.104.1.1 71589 1j1tA 233 1.53e+01 1mspA 126 1.55e+01 1mspA b.1.11.2 22333 1crzA 403 1.58e+01 1crzA b.68.4.1 27629 c.51.2.1 33211 2mspA 126 1.60e+01 1mspA b.1.11.2 22335 1qmvA 197 1.65e+01 1qq2A c.47.1.10 33066 2madH 373 1.65e+01 2bbkH b.69.2.1 27639 1s1dA 331 1.75e+01 1vcbC 160 1.84e+01 1vcbC b.3.3.1 22535 1g2aA 168 1.95e+01 d.167.1.1 65109 1v3eA 431 1.96e+01 1h09A 338 2.00e+01 b.109.1.1 83420 c.1.8.8 83421 5croA 66 2.04e+01 1orc a.35.1.2 17044 1a7cA 379 2.06e+01 1sek e.1.1.1 42660 1lgpA 116 2.15e+01 b.26.1.2 73890 1m1hA 248 2.24e+01 b.114.1.1 78415 d.58.42.1 78416 1n7vA 555 2.26e+01 b.126.1.1 85377 1mup 166 2.31e+01 1mup b.60.1.1 27133 1lm8V 160 2.38e+01 b.3.3.1 74035 1gr3A 160 2.51e+01 b.22.1.1 65476 1edqA 540 2.59e+01 1ctn b.1.18.2 21873 c.1.8.5 29002 d.26.3.1 38436 1ckaA 57 2.68e+01 1ckaA b.34.2.1 24459 1cqyA 99 2.69e+01 1b9zA b.3.1.1 22527 1lt5D 103 2.70e+01 3chbD b.40.2.1 24875 1p5vB 147 2.74e+01 b.2.3.2 87814 1evuA 731 2.80e+01 1f13A b.1.18.9 21883 b.1.5.1 22175 b.1.5.1 22176 d.3.1.4 37113 1aw7A 194 2.86e+01 1aw7A b.40.2.2 25164 d.15.6.1 37753 1ihkA 174 2.90e+01 1bfg b.42.1.1 62384 2bbkH 355 2.95e+01 2bbkH b.69.2.1 27634 1a12A 413 3.02e+01 1a12A b.69.5.1 27663 1eybA 471 3.07e+01 1ey2A b.82.1.4 28115 1ni9A 338 3.19e+01 e.7.1.2 85739 1ec7A 446 3.21e+01 1bqg c.1.11.2 29218 d.54.1.1 38862 1r6wA 322 3.26e+01 1jb7A 495 3.27e+01 1otcA b.40.4.3 62836 b.40.4.3 62837 b.40.4.3 62838 1dlfH 124 3.35e+01 1igtB b.1.1.1 20383 2azaA 129 3.37e+01 1nwpA b.6.1.1 22901 1ctn 540 3.49e+01 1ctn b.1.18.2 21876 c.1.8.5 29005 d.26.3.1 38439 1ift 263 3.60e+01 1mrj d.165.1.1 42211 1pieA 419 3.61e+01 1lj5A 379 3.61e+01 e.1.1.1 73928 1hy9A 41 3.62e+01 1hy9A g.3.17.1 61398 1pjxA 314 3.67e+01 1e1aA 314 3.67e+01 1e1aA b.68.6.1 59155 3tss 194 3.75e+01 1aw7A b.40.2.2 25160 d.15.6.1 37749 1ii7A 333 3.77e+01 1ii7A d.159.1.4 62415 1mbmA 198 3.79e+01 b.47.1.3 78916 1fnd 314 3.80e+01 1fnc b.43.4.2 25626 c.25.1.1 31516 1j48A 110 3.83e+01 b.1.7.1 84112 1acx 108 3.85e+01 2mcm b.1.7.1 22211 1fnc 314 3.87e+01 1fnc b.43.4.2 25627 c.25.1.1 31517 1q2wA 308 3.89e+01 b.47.1.4 88355 1mkfA 382 3.90e+01 b.116.1.1 79232 1p3dA 475 3.92e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 2hrvA 142 3.95e+01 2hrvA b.47.1.4 26429