# List of top-scoring protein chains for T0211.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gqpA 221 8.79e-04 b.18.1.9 70372 1jhjA 171 3.12e-02 b.18.1.9 66714 1eut 605 1.13e-01 1eut b.1.18.2 21891 b.18.1.1 23712 b.68.1.1 27609 1hg8A 349 3.86e-01 b.80.1.3 65830 1jbwA 428 9.92e-01 c.59.1.2 62860 c.72.2.2 62861 1k66A 149 1.50e+00 1ojxA 263 4.53e+00 1izkA 637 6.09e+00 b.1.18.2 83844 b.71.1.1 83845 c.1.8.1 83846 1ji1A 637 6.13e+00 b.1.18.2 71666 b.71.1.1 71667 c.1.8.1 71668 1izjA 637 6.13e+00 b.1.18.2 83841 b.71.1.1 83842 c.1.8.1 83843 1uh4A 637 6.16e+00 1a0i 348 7.11e+00 1a0i b.40.4.6 25363 d.142.2.1 41577 1t2xA 639 7.88e+00 1kexA 155 7.92e+00 b.18.1.2 77350 1a06 332 7.98e+00 1tkiA d.144.1.7 41634 1k3iA 656 8.05e+00 b.1.18.2 68113 b.18.1.1 68114 b.69.1.1 68115 1gof 639 8.09e+00 1gof b.1.18.2 21807 b.18.1.1 23709 b.69.1.1 27631 1et8A 341 8.92e+00 1nif b.6.1.3 23072 b.6.1.3 23073 1qgoA 264 9.05e+00 1qgoA c.92.1.2 35596 1gcqA 61 9.11e+00 1ckaA b.34.2.1 60434 1ewsA 32 9.59e+00 1ewsA g.9.1.1 59534 1p9oA 313 1.03e+01 1uewA 114 1.23e+01 1a0gA 282 1.28e+01 1daaA e.17.1.1 43276 1dypA 271 1.33e+01 1dypA b.29.1.2 24185 1qg8A 255 1.34e+01 1qg8A c.68.1.1 34505 1gfc 59 1.40e+01 1griA b.34.2.1 24537 1egdA 396 1.46e+01 3mdeA a.29.3.1 16596 e.6.1.1 42857 1uj0A 62 1.54e+01 1gxsB 158 1.56e+01 3daaA 277 1.59e+01 1daaA e.17.1.1 43272 1pt6A 213 1.62e+01 1daaA 282 1.67e+01 1daaA e.17.1.1 43270 1qcyA 193 1.87e+01 1ndsA 330 1.90e+01 1nif b.6.1.3 23112 b.6.1.3 23113 5daaA 277 2.02e+01 1daaA e.17.1.1 43282 1mioA 533 2.08e+01 1qguA c.92.2.3 35601 1hpt 56 2.11e+01 1tgsI g.15.1.1 44703 1jdiA 231 2.22e+01 c.74.1.1 66551 1k0wA 231 2.25e+01 c.74.1.1 77220 2at2A 300 2.31e+01 3csuA c.78.1.1 35196 c.78.1.1 35197 1pb6A 212 2.32e+01 a.4.1.9 88017 a.121.1.1 88018 1bvyF 191 2.36e+01 1bvyF c.23.5.1 31207 1dr9A 201 2.37e+01 1dr9A b.1.1.1 19762 b.1.1.3 21684 1i8lA 208 2.44e+01 1dr9A b.1.1.1 61970 b.1.1.3 61971 1cgjI 56 2.44e+01 2ovo g.15.1.1 44705 1m9aA 218 2.55e+01 a.45.1.1 84882 c.47.1.5 84883 1egeA 396 2.63e+01 3mdeA a.29.3.1 16604 e.6.1.1 42865 1gne 232 2.69e+01 1b8xA a.45.1.1 17721 c.47.1.5 33015 1dugA 234 2.70e+01 1b8xA a.45.1.1 17718 c.47.1.5 33012 1f1oA 431 2.72e+01 1f1oA a.127.1.1 19433 1hkmA 365 2.75e+01 1guvA 366 2.75e+01 c.1.8.5 83333 d.26.3.1 83334 1lg2A 365 2.75e+01 c.1.8.5 77950 d.26.3.1 77951 1hkkA 364 2.75e+01 1eo0A 77 2.76e+01 1eo0A a.48.3.1 17790 3mddA 385 2.80e+01 3mdeA a.29.3.1 16592 e.6.1.1 42853 1udyA 396 2.89e+01 1r4yA 136 2.91e+01 1g2wA 282 2.91e+01 1daaA e.17.1.1 43284 2bpa2 175 2.95e+01 2bpa2 1bg5 254 2.95e+01 1b8xA a.45.1.1 17723 c.47.1.5 33017 1b8xA 280 2.98e+01 1b8xA a.45.1.1 17739 c.47.1.5 33033 1vjhA 122 3.01e+01 1de3A 150 3.04e+01 1aqzA d.1.1.3 36240 1a41 234 3.05e+01 1a41 d.163.1.2 42174 1j0sA 157 3.11e+01 1m4vA 204 3.15e+01 b.40.2.2 74459 d.15.6.1 74460 1v9pA 584 3.36e+01 1uazA 254 3.48e+01 f.13.1.1 88392 1ndtA 336 3.50e+01 1nif b.6.1.3 23108 b.6.1.3 23109 1nshA 101 3.61e+01 a.39.1.2 86135 1m56C 266 3.65e+01 f.25.1.1 74474 1no7A 604 3.73e+01 1ivhA 394 3.80e+01 3mdeA a.29.3.1 16608 e.6.1.1 42869 1lssA 140 3.81e+01 c.2.1.9 74246 1qc5B 192 3.88e+01 1aoxA c.62.1.1 34148 1qc5A 192 3.97e+01 1aoxA c.62.1.1 34147