# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1gqpA	221	5.06e-03		b.18.1.9	70372
1jhjA	171	6.48e-02		b.18.1.9	66714
1euu	605	3.43e-01	1eut	b.1.18.2	21892
				b.18.1.1	23713
				b.68.1.1	27610
1eut	605	5.55e-01	1eut	b.1.18.2	21891
				b.18.1.1	23712
				b.68.1.1	27609
1k3iA	656	7.75e-01		b.1.18.2	68113
				b.18.1.1	68114
				b.69.1.1	68115
1goh	639	7.96e-01	1gof	b.1.18.2	21809
				b.18.1.1	23711
				b.69.1.1	27633
1gof	639	8.50e-01	1gof	b.1.18.2	21807
				b.18.1.1	23709
				b.69.1.1	27631
1dxrH	258	7.87e+00	6prcH	b.41.1.1	25456
				f.23.10.1	43433
6prcH	258	8.04e+00	6prcH	b.41.1.1	25457
				f.23.10.1	43436
1hg8A	349	9.83e+00		b.80.1.3	65830
1i6pA	220	1.33e+01	1ddzA	c.53.2.1	61848
1t2dA	322	1.40e+01			
1fo4A	1332	1.70e+01		a.56.1.1	17910
				d.15.4.2	37695
				d.41.1.1	38586
				d.87.2.1	40227
				d.133.1.1	41416
				d.145.1.3	41758
1xnaA	183	1.84e+01	1xnaA	b.18.1.8	23773
1kexA	155	1.86e+01		b.18.1.2	77350
1fiqC	763	1.86e+01	1fiqC	d.41.1.1	38588
				d.133.1.1	41418
1ceqA	316	1.93e+01	1ceqA	c.2.1.5	30163
				d.162.1.1	42130
1ldg	316	2.07e+01	1ceqA	c.2.1.5	30165
				d.162.1.1	42132
1al0G	175	2.12e+01	2bpa2	b.121.5.1	23275
1ah2	269	2.30e+01	1gci	c.41.1.1	32542
1hi9A	274	2.46e+01	1hi9A	c.99.1.1	61063
1l7aA	318	2.52e+01		c.69.1.25	77772
1o59A	355	2.72e+01			
1eq6A	189	3.06e+01	1eq6A	d.107.1.1	40796
2bpa2	175	3.17e+01	2bpa2		
1seiA	130	3.19e+01	1seiA	d.140.1.1	41463
1rtqA	299	3.22e+01			
1ofdA	1520	3.23e+01		b.80.4.1	86935
				c.1.4.1	86936
				d.153.1.1	86937
1llwA	1520	3.64e+01		b.80.4.1	74017
				c.1.4.1	74018
				d.153.1.1	74019
1pdkB	157	3.66e+01	1pdkB	b.2.3.2	22427
1j57A	143	3.70e+01		d.221.1.1	77079
1bxtA	234	3.76e+01	3seb	b.40.2.2	25210
				d.15.6.1	37799
1gcqA	61	3.85e+01	1ckaA	b.34.2.1	60434