# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1gqpA	221	9.75e-04		b.18.1.9	70372
1jhjA	171	5.57e-02		b.18.1.9	66714
1euu	605	8.82e-02	1eut	b.1.18.2	21892
				b.18.1.1	23713
				b.68.1.1	27610
1eut	605	1.23e-01	1eut	b.1.18.2	21891
				b.18.1.1	23712
				b.68.1.1	27609
1k3iA	656	9.11e-01		b.1.18.2	68113
				b.18.1.1	68114
				b.69.1.1	68115
1gof	639	1.05e+00	1gof	b.1.18.2	21807
				b.18.1.1	23709
				b.69.1.1	27631
1goh	639	2.42e+00	1gof	b.1.18.2	21809
				b.18.1.1	23711
				b.69.1.1	27633
1kexA	155	3.74e+00		b.18.1.2	77350
1qoiA	177	9.13e+00	2cpl	b.62.1.1	27490
1ha1	184	9.47e+00	1ha1	d.58.7.1	39147
				d.58.7.1	39148
1fo4A	1332	1.21e+01		a.56.1.1	17910
				d.15.4.2	37695
				d.41.1.1	38586
				d.87.2.1	40227
				d.133.1.1	41416
				d.145.1.3	41758
1fiqC	763	1.25e+01	1fiqC	d.41.1.1	38588
				d.133.1.1	41418
1avaC	181	1.32e+01	1avaC	b.42.4.1	25604
1fx3A	169	1.42e+01	1fx3B	d.33.1.1	38524
1smd	496	1.48e+01	1smd	b.71.1.1	27768
				c.1.8.1	28755
1l3kA	196	1.50e+01		d.58.7.1	73539
				d.58.7.1	73540
1dr9A	201	1.76e+01	1dr9A	b.1.1.1	19762
				b.1.1.3	21684
1fx3B	169	1.79e+01	1fx3B	d.33.1.1	38525
1df3A	162	1.84e+01	1mup	b.60.1.1	27134
1ah2	269	1.89e+01	1gci	c.41.1.1	32542
1al0G	175	1.98e+01	2bpa2	b.121.5.1	23275
1hg8A	349	2.07e+01		b.80.1.3	65830
1a78A	134	2.11e+01	1c1lA	b.29.1.3	24212
1seiA	130	2.13e+01	1seiA	d.140.1.1	41463
1ewsA	32	2.20e+01	1ewsA	g.9.1.1	59534
1dq3A	454	2.37e+01	1dq3A	b.86.1.2	28380
				d.50.3.1	38798
				d.95.2.2	40585
				d.95.2.2	40586
1mnd	762	2.39e+01	1lvk	b.34.3.1	24591
				c.37.1.9	32188
1eq6A	189	2.46e+01	1eq6A	d.107.1.1	40796
1hi9A	274	2.59e+01	1hi9A	c.99.1.1	61063
1kgcE	242	3.00e+01		b.1.1.1	77386
				b.1.1.2	77387
1jv4A	162	3.12e+01		b.60.1.1	67343
1dxrH	258	3.28e+01	6prcH	b.41.1.1	25456
				f.23.10.1	43433
6prcH	258	3.28e+01	6prcH	b.41.1.1	25457
				f.23.10.1	43436
1bk0	331	3.39e+01	1bk0	b.82.2.1	28118
1odmA	331	3.39e+01		b.82.2.1	86875
1v3eA	431	3.69e+01