# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gqpA 221 1.06e-04 b.18.1.9 70372 1jhjA 171 6.00e-03 b.18.1.9 66714 1euu 605 1.91e-02 1eut b.1.18.2 21892 b.18.1.1 23713 b.68.1.1 27610 1eut 605 1.94e-02 1eut b.1.18.2 21891 b.18.1.1 23712 b.68.1.1 27609 1gof 639 4.51e-02 1gof b.1.18.2 21807 b.18.1.1 23709 b.69.1.1 27631 1k3iA 656 5.18e-02 b.1.18.2 68113 b.18.1.1 68114 b.69.1.1 68115 1goh 639 6.18e-02 1gof b.1.18.2 21809 b.18.1.1 23711 b.69.1.1 27633 1smd 496 1.82e+00 1smd b.71.1.1 27768 c.1.8.1 28755 1xnaA 183 1.83e+00 1xnaA b.18.1.8 23773 1fx3B 169 4.82e+00 1fx3B d.33.1.1 38525 1fx3A 169 5.03e+00 1fx3B d.33.1.1 38524 1qy1A 174 5.74e+00 1jv4A 162 6.48e+00 b.60.1.1 67343 1ha1 184 7.44e+00 1ha1 d.58.7.1 39147 d.58.7.1 39148 1mzgA 146 7.62e+00 d.224.1.1 79696 1eq6A 189 8.93e+00 1eq6A d.107.1.1 40796 1i05A 180 8.94e+00 1mup b.60.1.1 27130 1kexA 155 9.69e+00 b.18.1.2 77350 1k12A 158 1.02e+01 b.18.1.15 71978 1i06A 180 1.03e+01 1mup b.60.1.1 27131 1jhsA 188 1.13e+01 d.107.1.1 84172 1mpxA 615 1.19e+01 b.18.1.13 85041 c.69.1.21 85042 1al0G 175 1.23e+01 2bpa2 b.121.5.1 23275 1c3hA 137 1.30e+01 1l3kA 196 1.36e+01 d.58.7.1 73539 d.58.7.1 73540 6prcH 258 1.39e+01 6prcH b.41.1.1 25457 f.23.10.1 43436 1dxrH 258 1.39e+01 6prcH b.41.1.1 25456 f.23.10.1 43433 1a8p 258 1.43e+01 1fdr b.43.4.2 25654 c.25.1.1 31544 1mnd 762 1.47e+01 1lvk b.34.3.1 24591 c.37.1.9 32188 2bpa2 175 1.52e+01 2bpa2 1kgcE 242 1.65e+01 b.1.1.1 77386 b.1.1.2 77387 1q8bA 105 1.72e+01 1r0pA 312 1.83e+01 1odmA 331 1.94e+01 b.82.2.1 86875 1bk0 331 1.94e+01 1bk0 b.82.2.1 28118 1df3A 162 1.95e+01 1mup b.60.1.1 27134 1a78A 134 2.06e+01 1c1lA b.29.1.3 24212 1v3eA 431 2.10e+01 1seiA 130 2.25e+01 1seiA d.140.1.1 41463 1mgrA 99 2.29e+01 d.1.1.2 79106 1hx0A 496 2.36e+01 b.71.1.1 61346 c.1.8.1 61347 1khiA 176 2.50e+01 b.34.5.2 77408 b.40.4.5 77409 1ic1A 190 2.53e+01 1zxq b.1.1.3 21654 b.1.1.4 21690 1tl2A 236 2.54e+01 1tl2A b.67.1.1 27541 1d0yA 761 2.58e+01 1lvk b.34.3.1 24581 c.37.1.9 32178 1dgrC 178 2.64e+01 1dgwA b.82.1.2 28100 1otjA 283 2.65e+01 1qasA 622 2.76e+01 1djxB a.39.1.7 17340 b.7.1.1 23157 c.1.18.1 29585 1gqwA 283 2.83e+01 b.82.2.5 70377 1gcqA 61 2.84e+01 1ckaA b.34.2.1 60434 1djxA 624 2.89e+01 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 4sgbI 51 2.94e+01 4sgbI g.15.1.2 44724 1i7qA 519 3.00e+01 1qdlA d.161.1.1 61901 1sluA 142 3.03e+01 1sluA b.16.1.1 23685 1pz7A 204 3.12e+01 1bxtA 234 3.19e+01 3seb b.40.2.2 25210 d.15.6.1 37799 1yts 278 3.25e+01 1ytw c.45.1.2 32690 1lvk 762 3.25e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1dgwA 178 3.25e+01 1dgwA b.82.1.2 28090 1ytw 306 3.26e+01 1ytw c.45.1.2 32689 1ytn 306 3.28e+01 1ytw c.45.1.2 32688 1lv7A 257 3.29e+01 c.37.1.20 78232 1sltB 134 3.30e+01 1c1lA b.29.1.3 24187 4dpvZ 584 3.32e+01 2cas b.121.5.2 23377 1ewsA 32 3.32e+01 1ewsA g.9.1.1 59534 1djxB 624 3.33e+01 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 1fiqC 763 3.33e+01 1fiqC d.41.1.1 38588 d.133.1.1 41418 1l1jA 239 3.35e+01 b.47.1.1 84516 1kmtA 141 3.51e+01 b.1.18.8 77442 1o9yA 84 3.54e+01 1ofdA 1520 3.70e+01 b.80.4.1 86935 c.1.4.1 86936 d.153.1.1 86937 2dabA 282 3.79e+01 1daaA e.17.1.1 43274 2mllB 255 3.83e+01 1abrB b.42.2.1 25567 b.42.2.1 25568 1rhoA 145 3.85e+01 1rhoA b.1.18.8 21899 1dar 691 3.86e+01 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1qatB 622 3.87e+01 1djxB a.39.1.7 17355 b.7.1.1 23172 c.1.18.1 29600 1rhoC 145 3.92e+01 1rhoA b.1.18.8 21901 1fo4A 1332 3.96e+01 a.56.1.1 17910 d.15.4.2 37695 d.41.1.1 38586 d.87.2.1 40227 d.133.1.1 41416 d.145.1.3 41758 1vom 762 3.96e+01 1lvk b.34.3.1 24577 c.37.1.9 32174