# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gqpA 221 1.39e-03 b.18.1.9 70372 1jhjA 171 7.03e-02 b.18.1.9 66714 1euu 605 2.48e-01 1eut b.1.18.2 21892 b.18.1.1 23713 b.68.1.1 27610 1eut 605 5.28e-01 1eut b.1.18.2 21891 b.18.1.1 23712 b.68.1.1 27609 1dugA 234 9.71e-01 1b8xA a.45.1.1 17718 c.47.1.5 33012 1b8xA 280 2.55e+00 1b8xA a.45.1.1 17739 c.47.1.5 33033 1khcA 147 2.81e+00 b.34.9.2 68608 1a0i 348 2.92e+00 1a0i b.40.4.6 25363 d.142.2.1 41577 2bpa2 175 2.99e+00 2bpa2 1al0G 175 3.49e+00 2bpa2 b.121.5.1 23275 1uzxA 169 4.81e+00 1eemA 241 5.52e+00 1eemA a.45.1.1 17717 c.47.1.5 33011 1dr9A 201 7.92e+00 1dr9A b.1.1.1 19762 b.1.1.3 21684 1ns5A 155 1.13e+01 c.116.1.3 80705 1dypA 271 1.14e+01 1dypA b.29.1.2 24185 1k0wA 231 1.22e+01 c.74.1.1 77220 1kawA 135 1.28e+01 3ullA b.40.4.3 25288 1gof 639 1.35e+01 1gof b.1.18.2 21807 b.18.1.1 23709 b.69.1.1 27631 1jdiA 231 1.36e+01 c.74.1.1 66551 1bquA 215 1.52e+01 1bquA b.1.2.1 22066 b.1.2.1 22067 3hmgA 328 1.53e+01 1hgeA b.19.1.2 23825 1k3iA 656 1.58e+01 b.1.18.2 68113 b.18.1.1 68114 b.69.1.1 68115 2viuA 328 1.67e+01 1hgeA b.19.1.2 23797 1goh 639 1.68e+01 1gof b.1.18.2 21809 b.18.1.1 23711 b.69.1.1 27633 1n9lA 109 1.77e+01 d.110.3.6 85468 1p6oA 161 1.79e+01 1ku1A 230 1.80e+01 a.118.3.1 72996 1eo0A 77 1.80e+01 1eo0A a.48.3.1 17790 1hgeA 328 1.91e+01 1hgeA b.19.1.2 23816 1mgrA 99 2.14e+01 d.1.1.2 79106 2gsq 202 2.44e+01 1pd21 a.45.1.1 17715 c.47.1.5 33009 1gudA 288 2.82e+01 c.93.1.1 83326 1div 149 3.06e+01 1div d.99.1.1 40692 d.100.1.1 40693 1rp4A 389 3.09e+01 2pldA 105 3.28e+01 1qadA d.93.1.1 40521 1kexA 155 3.39e+01 b.18.1.2 77350 1f8fA 371 3.65e+01 b.35.1.2 83246 c.2.1.1 83247 1ojxA 263 3.77e+01 1pb6A 212 3.90e+01 a.4.1.9 88017 a.121.1.1 88018 1l7aA 318 3.91e+01 c.69.1.25 77772 1k1gA 131 3.99e+01 d.51.1.1 68015