# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jhjA 171 1.56e-24 b.18.1.9 66714 1gqpA 221 6.07e-22 b.18.1.9 70372 1gof 639 1.44e-04 1gof b.1.18.2 21807 b.18.1.1 23709 b.69.1.1 27631 1k3iA 656 1.78e-04 b.1.18.2 68113 b.18.1.1 68114 b.69.1.1 68115 1xnaA 183 1.39e-01 1xnaA b.18.1.8 23773 1k12A 158 7.80e-01 b.18.1.15 71978 1d8hA 311 1.24e+00 1d8iA d.63.1.1 39544 1ema 236 1.68e+00 1ema d.22.1.1 38339 1o59A 355 2.22e+00 1kexA 155 2.39e+00 b.18.1.2 77350 1xyn 178 2.79e+00 1axkA b.29.1.11 24322 1d7pM 159 3.59e+00 1cztA b.18.1.2 23718 1dgwA 178 3.88e+00 1dgwA b.82.1.2 28090 1oxdA 227 4.39e+00 1o22A 170 5.75e+00 d.238.1.1 86557 1sek 378 5.86e+00 1sek e.1.1.1 42675 1t8hA 277 7.53e+00 1n9lA 109 8.21e+00 d.110.3.6 85468 1umhA 184 9.08e+00 1bvoA 175 1.02e+01 1a3qA b.2.5.3 22457 1ltlA 279 1.03e+01 b.40.4.11 84701 2nlrA 234 1.31e+01 2nlrA b.29.1.11 24344 1trb 320 1.42e+01 1trb c.3.1.5 30529 c.3.1.5 30530 1fo4A 1332 1.43e+01 a.56.1.1 17910 d.15.4.2 37695 d.41.1.1 38586 d.87.2.1 40227 d.133.1.1 41416 d.145.1.3 41758 1jd0A 263 1.67e+01 2cba b.74.1.1 62888 1r1dA 247 1.70e+01 1gt1A 159 1.74e+01 1g0sA 209 1.80e+01 1g0sA d.113.1.1 60187 1rurL 217 1.89e+01 1dbfA 127 1.92e+01 2chsA d.79.1.2 39761 1gpl 432 1.92e+01 1gpl b.12.1.2 23645 c.69.1.19 34793 1lvk 762 2.05e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1l8nA 679 2.18e+01 c.1.8.10 84564 d.92.2.2 84565 1kypA 237 2.30e+01 d.22.1.1 73280 1obpA 159 2.32e+01 1obpA b.60.1.1 27092 1jhnA 424 2.47e+01 b.29.1.12 70060 b.104.1.1 66722 1uxxX 133 2.48e+01 1d2oA 187 2.54e+01 1d2oA b.3.5.1 22625 b.3.5.1 22626 1fx3A 169 2.57e+01 1fx3B d.33.1.1 38524 2hvm 273 2.62e+01 1cnv c.1.8.5 28985 1fiqC 763 2.66e+01 1fiqC d.41.1.1 38588 d.133.1.1 41418 1lm4A 194 2.66e+01 d.167.1.1 84626 1kqzA 273 2.71e+01 c.1.8.5 68844 1kgcE 242 2.76e+01 b.1.1.1 77386 b.1.1.2 77387 1i4fA 275 2.77e+01 1agdA b.1.1.2 61687 d.19.1.1 61688 1r7aA 504 2.82e+01 1fc6A 388 3.11e+01 1fc6A b.36.1.3 64738 c.14.1.2 64739 1n3gA 113 3.17e+01 d.204.1.1 79962 1gxrA 337 3.26e+01 b.69.4.1 70722 1ucyH 150 3.54e+01 1ucyH 1larA 575 3.60e+01 1larA c.45.1.2 32693 c.45.1.2 32694 1hn2A 159 3.72e+01 b.60.1.1 65890 1g6hA 257 3.74e+01 1gajA c.37.1.12 60318 1vmoA 163 3.76e+01 1vmoA b.77.1.1 27974 1n9eA 787 3.91e+01 1kpeA 126 3.95e+01 1kpf d.13.1.1 37508 1l0lA 446 3.95e+01 d.185.1.1 84482 d.185.1.1 84483