# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jhjA 171 6.62e-21 b.18.1.9 66714 1gqpA 221 6.28e-19 b.18.1.9 70372 1k3iA 656 6.57e-05 b.1.18.2 68113 b.18.1.1 68114 b.69.1.1 68115 1gof 639 8.16e-05 1gof b.1.18.2 21807 b.18.1.1 23709 b.69.1.1 27631 1d7pM 159 6.59e-02 1cztA b.18.1.2 23718 1xnaA 183 1.69e-01 1xnaA b.18.1.8 23773 1kexA 155 1.73e-01 b.18.1.2 77350 1fx3A 169 4.81e-01 1fx3B d.33.1.1 38524 1k12A 158 6.64e-01 b.18.1.15 71978 1o59A 355 9.99e-01 1qexA 288 2.18e+00 1qexA b.32.1.1 24425 1xyn 178 2.39e+00 1axkA b.29.1.11 24322 1ngzB 220 2.49e+00 b.1.1.1 80502 b.1.1.2 80503 1n9lA 109 2.50e+00 d.110.3.6 85468 1n0xH 230 2.76e+00 1m4vA 204 3.10e+00 b.40.2.2 74459 d.15.6.1 74460 1dgwA 178 3.25e+00 1dgwA b.82.1.2 28090 1c5cH 215 3.31e+00 1igtB b.1.1.1 20475 b.1.1.2 21439 1rzfH 235 3.50e+00 1czsA 160 4.72e+00 1cztA b.18.1.2 23714 1cztA 160 4.72e+00 1cztA b.18.1.2 23715 1h9dA 134 5.28e+00 1cmoA b.2.5.6 60821 1kgcE 242 5.41e+00 b.1.1.1 77386 b.1.1.2 77387 1mi8A 158 5.76e+00 1cs6A 382 6.09e+00 1cs6A b.1.1.4 21760 b.1.1.4 21761 b.1.1.4 21762 b.1.1.4 21763 1d8hA 311 6.18e+00 1d8iA d.63.1.1 39544 1aohA 147 6.65e+00 1aohA b.2.2.2 22401 1hilB 220 7.95e+00 1igtB b.1.1.1 19787 b.1.1.2 20897 1ospH 218 8.15e+00 1igtB b.1.1.1 20117 b.1.1.2 21147 1umhA 184 8.79e+00 1o6sB 105 9.02e+00 b.1.6.1 81096 1fc1A 224 9.23e+00 1igtB b.1.1.2 21520 b.1.1.2 21521 1uvqB 198 1.09e+01 1dqqB 210 1.15e+01 1igtB b.1.1.1 20421 b.1.1.2 21391 1i40A 175 1.19e+01 b.40.5.1 66024 1c3hA 137 1.21e+01 1iakA 199 1.28e+01 1iakA b.1.1.2 21625 d.19.1.1 38199 1pfsA 78 1.33e+01 1pfsA b.40.4.7 25391 1nlbH 218 1.38e+01 b.1.1.1 80621 b.1.1.2 80622 1kcvH 217 1.40e+01 b.1.1.1 72315 b.1.1.2 72316 1rurL 217 1.48e+01 1rurH 218 1.52e+01 1cl7I 82 1.61e+01 1igtB 1pgs 314 1.64e+01 1pgs b.121.1.1 23653 b.121.1.1 23654 1i8aA 189 1.65e+01 1i82A b.1.9.2 61951 1q9rB 222 1.74e+01 1shbA 104 1.77e+01 1fmk d.93.1.1 40425 1ema 236 1.79e+01 1ema d.22.1.1 38339 1qqgA 264 1.81e+01 1qqgA b.55.1.2 26987 b.55.1.2 26988 1p7tA 731 1.88e+01 1wba 175 1.89e+01 1wba b.42.4.1 25591 1ajsA 412 1.90e+01 1ajsA c.67.1.1 34276 1hyxH 224 1.90e+01 1igtB b.1.1.1 20167 b.1.1.2 21191 1ogaE 252 1.94e+01 b.1.1.1 86992 b.1.1.2 86993 1d8cA 723 1.95e+01 1d8cA c.1.13.1 29325 1r1dA 247 2.00e+01 1mlcB 218 2.01e+01 1igtB b.1.1.1 20053 b.1.1.2 21095 1oxdA 227 2.03e+01 1oe9A 795 2.06e+01 1obwA 175 2.07e+01 2prd b.40.5.1 25416 1ff9A 450 2.10e+01 1ff9A c.2.1.3 30039 d.81.1.2 39954 1jatA 155 2.10e+01 1u9aA d.20.1.1 62818 1jssA 224 2.20e+01 d.129.3.2 71844 1guiA 155 2.26e+01 b.18.1.14 76351 1ev2E 220 2.33e+01 1cvsC b.1.1.4 21738 b.1.1.4 21739 1q0xH 221 2.33e+01 1jguH 217 2.36e+01 b.1.1.1 66688 b.1.1.2 66689 1o4rA 108 2.42e+01 1ah6 220 2.45e+01 1yer d.122.1.1 41094 1qvcA 145 2.47e+01 3ullA b.40.4.3 25284 1k5cA 335 2.54e+01 b.80.1.3 72076 1gxrA 337 2.62e+01 b.69.4.1 70722 1ncwH 222 2.64e+01 b.1.1.1 85555 b.1.1.2 85556 1eaqA 140 2.64e+01 b.2.5.6 76144 1i4fA 275 2.70e+01 1agdA b.1.1.2 61687 d.19.1.1 61688 1lkfA 299 2.81e+01 1pvl f.6.1.1 43821 1nhcA 336 2.88e+01 1vom 762 2.99e+01 1lvk b.34.3.1 24577 c.37.1.9 32174 1vmoA 163 3.03e+01 1vmoA b.77.1.1 27974 8fabB 224 3.04e+01 1igtB b.1.1.1 19773 b.1.1.2 20883 2bpa2 175 3.06e+01 2bpa2 1go4A 205 3.08e+01 d.135.1.1 70292 2tgi 112 3.08e+01 2tgi g.17.1.2 44777 1larA 575 3.08e+01 1larA c.45.1.2 32693 c.45.1.2 32694 1wejH 223 3.09e+01 1igtB b.1.1.1 20361 b.1.1.2 21353 1d1gA 168 3.10e+01 1d1gA c.71.1.1 34889 1mpp 361 3.12e+01 2rmpA b.50.1.2 26856 1m2kA 249 3.14e+01 c.31.1.5 84754 1u9aA 160 3.15e+01 1u9aA d.20.1.1 38333 1shdA 107 3.17e+01 1fmk d.93.1.1 40440 1lvk 762 3.20e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1ny4A 82 3.27e+01 1t8hA 277 3.45e+01 1jhnA 424 3.47e+01 b.29.1.12 70060 b.104.1.1 66722 1acc 735 3.56e+01 1acc f.11.1.1 43828 1ltlA 279 3.58e+01 b.40.4.11 84701 1hg8A 349 3.62e+01 b.80.1.3 65830 1d0yA 761 3.65e+01 1lvk b.34.3.1 24581 c.37.1.9 32178 1o22A 170 3.67e+01 d.238.1.1 86557 1ucyH 150 3.69e+01 1ucyH 1qynA 153 3.76e+01 1jd0A 263 3.80e+01 2cba b.74.1.1 62888 1rtfB 252 3.82e+01 5ptp 1n3gA 113 3.92e+01 d.204.1.1 79962 1mjuH 227 3.96e+01 1gppA 237 3.97e+01 b.86.1.2 76262