# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jhjA	171	2.69e-21		b.18.1.9	66714
1gqpA	221	6.53e-19		b.18.1.9	70372
1k3iA	656	6.16e-03		b.1.18.2	68113
				b.18.1.1	68114
				b.69.1.1	68115
1gof	639	6.72e-03	1gof	b.1.18.2	21807
				b.18.1.1	23709
				b.69.1.1	27631
1xyn	178	1.16e+00	1axkA	b.29.1.11	24322
1umhA	184	2.01e+00			
1ema	236	3.27e+00	1ema	d.22.1.1	38339
1fo4A	1332	5.86e+00		a.56.1.1	17910
				d.15.4.2	37695
				d.41.1.1	38586
				d.87.2.1	40227
				d.133.1.1	41416
				d.145.1.3	41758
1k12A	158	6.31e+00		b.18.1.15	71978
2nlrA	234	6.48e+00	2nlrA	b.29.1.11	24344
1fiqC	763	6.50e+00	1fiqC	d.41.1.1	38588
				d.133.1.1	41418
1oxdA	227	6.63e+00			
1o59A	355	8.00e+00			
1r7aA	504	8.67e+00			
1d7pM	159	8.83e+00	1cztA	b.18.1.2	23718
1xnaA	183	1.01e+01	1xnaA	b.18.1.8	23773
1gxrA	337	1.44e+01		b.69.4.1	70722
1h9dA	134	1.47e+01	1cmoA	b.2.5.6	60821
1d8hA	311	1.49e+01	1d8iA	d.63.1.1	39544
1eaqA	140	1.93e+01		b.2.5.6	76144
1kgcE	242	2.01e+01		b.1.1.1	77386
				b.1.1.2	77387
1ro0A	216	2.14e+01			
1pfsA	78	2.24e+01	1pfsA	b.40.4.7	25391
1uxxX	133	2.25e+01			
1gmmA	133	2.26e+01		b.18.1.10	65314
1kexA	155	2.30e+01		b.18.1.2	77350
1l1jA	239	2.36e+01		b.47.1.1	84516
1rurL	217	2.38e+01			
1vmoA	163	2.43e+01	1vmoA	b.77.1.1	27974
1i40A	175	2.48e+01		b.40.5.1	66024
1dgwA	178	2.48e+01	1dgwA	b.82.1.2	28090
1lm4A	194	2.59e+01		d.167.1.1	84626
1trb	320	2.60e+01	1trb	c.3.1.5	30529
				c.3.1.5	30530
1ni4B	341	2.67e+01		c.36.1.7	85729
				c.48.1.2	85730
1kypA	237	2.69e+01		d.22.1.1	73280
1eerB	227	2.80e+01	1eerB	b.1.2.1	22011
				b.1.2.1	22012
1obwA	175	2.96e+01	2prd	b.40.5.1	25416
1larA	575	3.08e+01	1larA	c.45.1.2	32693
				c.45.1.2	32694
1dbfA	127	3.10e+01	2chsA	d.79.1.2	39761
1jssA	224	3.16e+01		d.129.3.2	71844
1o22A	170	3.27e+01		d.238.1.1	86557
1jj2B	337	3.35e+01	1ffkB	b.43.3.2	63086
1ro2A	216	3.48e+01			
1b8aA	438	3.72e+01	1b8aA	b.40.4.1	25244
				d.104.1.1	40765