# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jhjA 171 2.14e-23 b.18.1.9 66714 1gqpA 221 3.36e-21 b.18.1.9 70372 1gof 639 5.68e-05 1gof b.1.18.2 21807 b.18.1.1 23709 b.69.1.1 27631 1k3iA 656 7.23e-05 b.1.18.2 68113 b.18.1.1 68114 b.69.1.1 68115 1xnaA 183 2.84e-01 1xnaA b.18.1.8 23773 1o59A 355 3.97e-01 1ema 236 4.89e-01 1ema d.22.1.1 38339 1kexA 155 7.79e-01 b.18.1.2 77350 1xyn 178 8.01e-01 1axkA b.29.1.11 24322 1oxdA 227 1.05e+00 1d7pM 159 1.63e+00 1cztA b.18.1.2 23718 1k12A 158 3.04e+00 b.18.1.15 71978 1dgwA 178 3.62e+00 1dgwA b.82.1.2 28090 1kypA 237 4.96e+00 d.22.1.1 73280 1pfsA 78 7.05e+00 1pfsA b.40.4.7 25391 1h9dA 134 9.12e+00 1cmoA b.2.5.6 60821 1uxxX 133 1.28e+01 2nlrA 234 1.30e+01 2nlrA b.29.1.11 24344 1gpl 432 1.31e+01 1gpl b.12.1.2 23645 c.69.1.19 34793 1l8nA 679 1.33e+01 c.1.8.10 84564 d.92.2.2 84565 1qvcA 145 1.37e+01 3ullA b.40.4.3 25284 1gmmA 133 1.40e+01 b.18.1.10 65314 1fx3A 169 1.44e+01 1fx3B d.33.1.1 38524 1eerB 227 1.53e+01 1eerB b.1.2.1 22011 b.1.2.1 22012 1o6sB 105 1.64e+01 b.1.6.1 81096 1d2oA 187 1.65e+01 1d2oA b.3.5.1 22625 b.3.5.1 22626 1qexA 288 1.73e+01 1qexA b.32.1.1 24425 1kgcE 242 1.77e+01 b.1.1.1 77386 b.1.1.2 77387 1pvxA 194 1.85e+01 1axkA b.29.1.11 24341 1k1xA 659 1.92e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1rurL 217 1.93e+01 1d8hA 311 2.04e+01 1d8iA d.63.1.1 39544 1vmoA 163 2.25e+01 1vmoA b.77.1.1 27974 1cb8A 678 2.34e+01 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 1o4rA 108 2.34e+01 1jhnA 424 2.41e+01 b.29.1.12 70060 b.104.1.1 66722 1ltlA 279 2.44e+01 b.40.4.11 84701 1jd0A 263 2.45e+01 2cba b.74.1.1 62888 1jssA 224 2.60e+01 d.129.3.2 71844 1i40A 175 2.63e+01 b.40.5.1 66024 2hvm 273 2.80e+01 1cnv c.1.8.5 28985 1acc 735 2.83e+01 1acc f.11.1.1 43828 1trb 320 2.85e+01 1trb c.3.1.5 30529 c.3.1.5 30530 1shbA 104 2.89e+01 1fmk d.93.1.1 40425 1nqzA 194 2.92e+01 d.113.1.1 86077 1n9lA 109 3.00e+01 d.110.3.6 85468 1jpyA 137 3.08e+01 g.17.1.6 67065 1obwA 175 3.33e+01 2prd b.40.5.1 25416 1ni4B 341 3.35e+01 c.36.1.7 85729 c.48.1.2 85730 1d8cA 723 3.40e+01 1d8cA c.1.13.1 29325 1q4rA 112 3.41e+01 1hp1A 516 3.41e+01 d.114.1.1 70976 d.159.1.2 70977 1fo8A 343 3.46e+01 1foaA c.68.1.10 59927 1ut7A 171 3.46e+01 1umhA 184 3.47e+01 1ro0A 216 3.66e+01 1uok 558 3.96e+01 1uok b.71.1.1 27801 c.1.8.1 28788