# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jhjA	171	1.10e-29		b.18.1.9	66714
1gqpA	221	7.16e-26		b.18.1.9	70372
1gof	639	7.66e-02	1gof	b.1.18.2	21807
				b.18.1.1	23709
				b.69.1.1	27631
1k3iA	656	8.01e-02		b.1.18.2	68113
				b.18.1.1	68114
				b.69.1.1	68115
1dxrL	273	2.80e+00	6prcL	f.26.1.1	43431
1umhA	184	4.17e+00			
1xnaA	183	6.29e+00	1xnaA	b.18.1.8	23773
1pfsA	78	8.89e+00	1pfsA	b.40.4.7	25391
1ct9A	553	1.18e+01	1ct9A	c.26.2.1	31616
				d.153.1.1	41834
1ni4B	341	1.28e+01		c.36.1.7	85729
				c.48.1.2	85730
1eaqA	140	1.42e+01		b.2.5.6	76144
1n7fA	97	1.53e+01			
1n7eA	97	1.55e+01			
1uzxA	169	1.76e+01			
1r1dA	247	1.86e+01			
1jmtA	104	1.99e+01		d.58.7.3	63180
1ltoA	245	2.52e+01		b.47.1.2	84707
1eerB	227	2.53e+01	1eerB	b.1.2.1	22011
				b.1.2.1	22012
1kamA	194	2.88e+01		c.26.1.3	72254
1dbfA	127	2.96e+01	2chsA	d.79.1.2	39761
1jsf	130	3.05e+01	3lzt	d.2.1.2	36410
1lz1	130	3.09e+01	3lzt	d.2.1.2	36415
1q08A	99	3.20e+01			
1a41	234	3.30e+01	1a41	d.163.1.2	42174
1czj	111	3.38e+01	3cyr	a.138.1.1	19663
1o22A	170	3.45e+01		d.238.1.1	86557
1kwaA	88	3.54e+01	1kwaA	b.36.1.1	24772
1f9aA	168	3.61e+01	1f9aA	c.26.1.3	31602
1v3eA	431	3.65e+01