# CreatePredAlphaCost pred_alpha2k alpha11 T0210.t2k.alpha.rdb 2 alpha alpha_prev sum # CreatePredAlphaCost pred_alpha04 alpha11 T0210.t04.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 5 near_backbone 3 way_back 3 dry5 7 dry6.5 9 dry8 9 dry12 2 \ phobic_fit 3 \ sidechain 6 \ bystroff 5 \ soft_clashes 15 backbone_clashes 2 \ break 40 \ constraints 1 \ hbond_geom 0.1 \ hbond_geom_backbone 0.1 \ hbond_geom_beta 0.4 \ hbond_geom_beta_pair 1.5 // Add the following for extra-cellular proteins: # known_ssbond 0.5 # and put ssbond command in constraints file # maybe_ssbond 0.5 # from t04-thin40.mi Constraint F54.CB V123.CB -10. 7.0 12.0 0.772157 Constraint L71.CB G120.CA -10. 7.0 12.0 0.596468 # from t04-thin62.mi Constraint Y64.CB G120.CA -10. 5.0 12.0 0.555221 # from t2k-thin40.mi Constraint E12.CB E138.CB -10. 7.0 12.0 0.551905 # from t2k-thin62.mi Constraint F54.CB S109.CB -10. 7.0 12.0 0.629911 Constraint I73.CB F107.CB -10. 7.0 12.0 0.580143 # Put the helices on the back face Constraint L154.CB Y74.CB -5.0 8.0 14.0 1 Constraint F7.CB Y74.CB 5.0 14.0 18.0 1