(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0210 SOR12, S.oneidensis
    • gi|22986010|ref|ZP_00031115.1|_17:177 COG3542: Uncharacterized conserved protein [Burkholderia fungorum]
    • gi|22978046|ref|ZP_00023817.1|_49:207 COG3542: Uncharacterized conserved protein [Ralstonia metallidurans]
    • gi|23041189|ref|ZP_00072666.1|_8:168 COG3542: Uncharacterized conserved protein [Trichodesmium erythraeum IMS101]
    • gi|23063329|ref|ZP_00088060.1|_7:168 COG3542: Uncharacterized conserved protein [Pseudomonas fluorescens PfO-1] 
              10         20        30             40          50       
              |          |         |              |           |       
   1 MQNADDFIKFLELEQHV.EGGFYRSSYRSETAF.....DPSRQLWSSIYFLL..RTGEVSHFHRL
   2 -QNADDFIKFLELEQHV.EGGFYRSSYRSETAF.....DPSRQLWSSIYFLL..RTGEVSHFHRL
   3 ---AAELIAGLGLERHP.EGGWYRETYRAAGTIpg9qvGGERSFSTAIYFLL..ERGDISALHRI
   4 -QTADEFIQLLELEQHI.EGGYYRSSYSSQSNF.....DQTRSLWSSIYFLL..RTGEVSHFHRL
   5 -MDKEDLIRTLELAPHV.EGGYFRQTKKASDTInla..GKGRALYTSIYFLL..EETNPSHFHRL
   6 ----NYWVEKLELLPHP.EGGFYKETYRSPVEAnfagfDGSRNVVTGIYFLM..TKDNFSAFHRI
   7 --PAKAWIEALGLQPHP.EGGYFREVYRSAGSIp10fqGGDRPYCTSIYFLL..PSTACSRLHRI
   8 --SAEYFIKSLNMTAHP.EGGYFKESFISPSKLap7hiNEERLLWTSIYFLL..RTGEVSNFHRL
   9 --TAEGWISALDLQPHP.EGGFYREIYRADGMVtag..DRQRSASTAIYYLL..RAGERSRLHRL
  10 --SAADLIRQFNLQPHP.EGGYFRETYRAADAVtrapdGAPRAASTAIYYLL..CDGAYSSWHRI
  11 ---ADRLIKALDLLPHP.EGGYFRETYRSAENIqcsd.GRQRSASTAIYYML..RDSDFSAWHRI
  12 ----ATLIRRLGLLPHP.EGGHYRETYRADDAVtrad.GARRAASTAILYLL..CDGAWSTWHRI
  13 -------IRTLELAPHI.EGGYFRQTKKASDTInla..GKGRALYTSIYFLL..EETNPSHFHRL
  14 ----DELIRRLDLKPHP.EGGFFSETYRSAERVir9gsAQTRSASTAIYYLL..CDGAHSAWHRI
  15 ----QMWIEKLGLEAHP.EGGYFKQTNKSEQLIptk..RGERALHTAILFLL..NTESPSHFHRL
  16 --SATDLIRQFDLQPHP.EGGYFRETYRATDSVvrpadGAPRAASTAIYYLL..CDGAYSSWHRI
  17 -KNAEYFIKKLDLEKHP.EGGYYRRIYQSDEMVnk9ryDSDRFYSTSIYYLL..NGNDVSKFHRL
  18 MMTANDWIDRLELISHP.EGGYFKETMRGD---.....GKGRASFSSIYFLL..TQRDISHFHRI
  19 ---AQRLIDRLGLEPHP.EGGFYRETYRSEERIhrgvpAVERTACTAIYYLL..AEDAYSAWHRI
  20 ----QRLIDELSLVPHP.EGGYYRETYRDPARItrvadGAERSASTAIYYLL..CDGAYSAWHRI
  21 --KSSEIVGKLNLRAHQ.EGGFFAETFRDSSVFl10tfKVDRAVSTSIYFLL..PSGSVSRLHRI
  22 --TAEFWIGRLGLERHP.EGGWYRETYRSEGSYgf8pfGSPRSYATSIFYLL..EHGDRSRLHRI
  23 --KSSEIVGKLNLRAHQ.EGGFFAETFRDSSVFl15plKVDRAVSTSIYFLL..PSGSVSRLHRI
  24 -MTATEVAALLDLKPHP.EGGYYTETFRDGSVSv10qyKVDRAISTAIYFLL..PSGSVSHLHRI
  25 ---IQNLLENLQLLPHP.GGGFYKEVYRSQGIIpk9kfSGDRSYCTSIYSLL..TSEDFFGFHKV
  26 ----ATLIRRLGLLPHP.EGGHYRETYRADDAVtrad.GARRAASTAILYLL..CDGAWSTWHRI
  27 -KSAEQWIDELQLESHP.EGGFYRETIREVL-K.....DGRRAPFSSIYFLL..TDDNISHFHRI
  28 --SASNLIASLDLEPHV.EGGYFRRTYQADHRDmlettSGSRFLMTSIYYLLt.EDSPVGQFHFN
  29 --TAAQVIDALGLKPHP.EGGHYRETFRDPRTV.....D-GRSVGTAIYYLL..GVGETSAWHRV
  30 --SSAEIIATLGLKPHP.EGGWYAETFRDGA--.....GGARGHSTAIYFLL..EQHQLSAWHRV
  31 ----KRLIALYELTPHPaSGGWFRETYRSDVQVeaegfDGKRSVLTMIYYLM..QAGQPDPFHRV
  32 -MTAAAIIETLGLARHP.EGGWYGETFRDAN--.....GGARGHSTAIYYLL..ERGDRSHWHRV
  33 --TAEDLIAHYALEPIPrEGGLFRRTWAGPGRP.....D-GRPAGSAIVALLtaRPGDFSALHRL
  34 --GAQEIVRMLDLQPHP.EGGWYRQTFQDAPGP.....-DGRAASTCIYYLL..EAEQMSAWHRV
  35 --TAQDVISALNLTPHP.EKGWYIETYRDPHNFtd7gtSRSRSPSTNIYYLLe.GESGLSHWHRV
  36 -PTAAEIIARLELRPHP.EGGHYRETFRDQTTD.....ANGRSRSTLIYFLL..ARGERSHWHRI
  37 --AAESVIAHLGLQPHP.EGGHYAETWRHVPE-.....GGGRGAGTAIYYLL..KAGERSHWHRV
  38 --SAAEVIARLGLQPHP.EGGHYRETFRDPRCD.....ASGRSYSTAIHFLL..RAGERSHWHRI
  39 ----EDLVAHYRLEPIPrEGGRFRRTWAGPERA.....D-GRPEGTAIMALLtaEPDDFSALHRL
  40 -MSAQAIIRELGLEPHP.EGGFYHQTFRDKA--.....GGERGHSTAIYYLL..EKGVRSHWHRV
  41 ---ADRIIARLGLARHP.EGGWYRETWRAP---.....AEGRPPGTAILFLL..KAGERSHWHRI
  42 --TAAALIRTLGLAPHP.EGGHYRRVYASTRQVlddsgAPPRPALTAIRFLL..CAGEASRWHRV
  43 ---SSEIINKFKLSPHP.EGGWFREIIRSKNHVtrnd.GQKRNNITSIYYLL..CKSERSKWHRV
  44 --TANEIITLLGLTPHP.EGGYFFKSFQDPQS-.....HIGRAHSTCIYYLVi.GNGGPTRWHRI
  45 --TAAALIRSLDLAPHP.EGGHYRRVYASARQVtgn..GHTRPAMTAIRFLL..SAGECSAWHRV
  46 -----SLVARWRLQPHP.EGGWYREVQRSSIQVtrpd.GQQRSAITTVLFLL..GAEDVSRWHCV
  47 -----RLIEQFQLSPHP.EGGWYREVIRSDLTVkrsd.GHQRNAITGIFFLL..GKDDKSCWHCV
  48 --SAAQIVDLLDMEPSD.EGGYFYQTFKDPDVKp....GTNRSISTAIYYLLq.GSTGQSLWHTL
  49 ---ARSIVERLGLETHP.EGGWYTRDWQSPHTDe....ASSRPLSSLIYFLL..PEGDASAWHKV
  50 ---LQQLINDWQLIKHR.EGGYFKETDRSPYTMe14teMVTRNQSTLIYYLLt.PDSPIGKFHKN
  51 ---------RLGLETHP.EGGWYTRDWQSPHTDe....VSSRPLSSLIYFLL..PEGDASAWHKV
  52 ---SKSLIEALSLELHI.EGGYFRQTDADPTTIp25ysTNTRRLSTTIFYLLt.PRQSKGNFHRN
  53 --KSSEIVGKLNLRAHQ.EGGFFAETFRDSSVFl10tfKVDRAVSTSIYFLL..PSGSVSRLHRI
  54 -----SLVARWRLQPHP.EGGWYREVQRSSIQVtrpd.GQQRSAITTVLFLL..GAEDVSRWHCV


        60        70              80             90             100    
        |         |               |              |               |    
   1 .TADEMWYFHAGQSLTIYM.....ISPE.G....EL.TTAQLGLDLAA.GE.....RPQFLVPKG
   2 .TADEMWYFHAGQSLTIYM.....ISPE.G....EL.TTAQLGLDLAA.GE.....RPQFLVPKG
   3 .RSDELWHFHAGAPLIVHV.....ITPA.G....GS.YALTLGSDPAS.GE.....TFQAVVPAG
   4 .TADEMWYFHAGESLTIYM.....ISEQ.G....EL.TTAQLGLNIAA.GE.....RPQFLVPKG
   5 .TADEIWYFHAGSPLTVHM.....ITAD.G....HY.EAVTLGLDISK.GQ.....QLHYCVPKG
   6 .KSDEMWHFYAGDSLEIYW.....FSPQ.G....EL.EVISLGLDLEK.GE.....VPQAVVLKD
   7 .ASDELWHFYTGSSLRIHV.....ILPT.G....EY.QALRLGINLDQ.GE.....QLQQVVPAG
   8 .KSDEMWYFHAGESLTIYM.....ISPN.G....EL.IEKQLGLNIEK.GE.....TPQVLVPKD
   9 .KSDELWHFYAGQPLTVHQ.....LIPE.Q....GY.QTLTIGADLSQ.GQ.....QLCGAVPAG
  10 .RSDEVWHFYAGDPLEVWV.....LDEH.D....GL.TIHRLGNPLTHpGT.....VFQAVVPAG
  11 .RSDELWHFHAGTPLDVHV.....LTSD.G....NL.VTHRLGNPLEHhGA.....VFQAMVPAN
  12 .RADELWHFHAGAPLHIHV.....LAPD.G....GY.RRLRLGNTLEDaGA.....EFQAVVPAG
  13 .TADEIWYFHAGSPLTVHM.....ITAD.G....HY.EAVTLGLDISK.GQ.....QLHYCVPKG
  14 .KSDEVWHFYAGEPLHVHV.....LDET.G....AL.VTHKLGNALTHaDA.....VFQAVVPAG
  15 .KADELWFFHDGQPLTVHC.....IFPD.G....TY.QAVQLGKDLVQ.GQ.....QLSFSVPAG
  16 .RSDEVWHFYAGDPIEVWV.....LDER.D....GL.TIHRLGNPLTHpGT.....VFQAVVRAG
  17 .KSDEIWHYYFGSLVIIHI.....IDNF.G....NY.TLEKLGPNLEE.NE.....NFQVIIPKN
  18 .DADEVWYYHAGQTLKIHM.....ITPK.G....EY.HTVKLGRDIDC.GE.....CLQYCVPKG
  19 .RSDELWHFHAGDPLNVYV.....LEDG.G....AV.TTHRLGHAVEDeRS.....TYQAMVPAG
  20 .QSDEAWHFYAGDVLNVHV.....LAPD.G....AF.TTHRLGNPLFQpGT.....VFQAVVPAG
  21 .PMAETWHFYLGEPLTVVE.....LYDD.G....KL.KFTCLGPDLFE.GDq....KPQYTVPPN
  22 .RSDEQWYFHAGSPLDVHC.....FPET.G....DP.SLFTLGDDPNA.GQ.....VLHSWVSAG
  23 .PMAETWHFYLGEPLTVVE.....LYDD.G....KL.KFTCLGPDLFE.GDq....KPQYTVPPN
  24 .PCAETWHFYKGEPLTVFE.....LHDD.G....HI.DLTVIGPHLEA.GQ.....RPQYTVPPN
  25 .KQDEIYHFYGGSSLTVHT.....ISQE.G....NY.LKRKLGMDLEN.GE.....QPQLVIPAE
  26 .RADELWHFHAGAPLHIHV.....LASD.G....GY.RRLRLGNTLEDaGA.....EFQAVVPAG
  27 .DADEVWYYHAGDSLTIHM.....INPD.G....EY.TTATLGTDIQN.GD.....VLQYVVPKG
  28 .HSDILHYFHLGDAIEYSL.....ILED.G....SL.QTLVMGSDVLA.GQ.....HLQLHVPGG
  29 .DAAEIWHWHAGAPMVITL.....SPNG.H....DA.SAHHLGPDLLR.GQ.....RPQIVVPAG
  30 kDAAEVWHFHAGAPLALSM.....WEEG.GatgsQV.IEQVLGIGLAA.GE.....RPQIVVPAG
  31 .KSDETFVHNLGGSMKIHM.....IHPD.G....SY.SCSILGNPLEH.PEa....RHQVVVPRR
  32 hDAAEVWHYYAGAPLELSI.....AEPG.R....AA.SQTRLGPDLLG.GE.....RPQQVVPAG
  33 .PADEVWHFYLGDPLELLL.....LAPD.G....SA.RTAVLGPDVLG.GQ.....HVQYTVPAG
  34 .DAVETWHYYAGAPISLTL.....SPPD.Gk...GA.SAYVLGPDLRA.GC.....RPQVIVPTL
  35 lDAVEVWHYYAGAPLQLSL.....SWDD.Gs...PV.RDLVLGPDIWN.GQ.....RPQIVVERG
  36 .DAVEIWHYYAGSPLMLRI.....AHEG.C....SQ.HEVRLGTDLVS.GE.....RPQAIVPAD
  37 .DATEIWHYHAGDPLRLLL.....SADG.C....GT.QGVVLGPDILA.GQ.....RPQVIVPPG
  38 .DAVEVWHYYAGAALMLEV.....AGED.G....H-.RAATLGPDLVA.GH.....LPQVIVPPQ
  39 .PADEVWHFYLGDPLELLL.....LAPD.G....SA.RTPVLGPDVLD.GQ.....DLQYVVPAG
  40 tDAVEVWHYYAGAPIALHL.....SQDG.R....EV.QTFTLGPAILE.GE.....RPQVIVPAN
  41 .DATEIWHFHAGAPLILSV.....AADGaG....PA.REIRLGPDVLA.GE.....SPQGIVPPH
  42 .DAEECWHWQQGAPLELLI.....FDEA.S....GQ.LRREV-LDAAE.RG.....DAMHVVPAG
  43 nSSDEIWIYLQGAPLNLYF.....LDDN.K....EL.RNIRLDLN---.--.....NPIEMIPSG
  44 nDACEVWHHYAGAPLKISV.....AWDD.Et...GV.RSKILGKELAR.GQ.....RPQAVVEKA
  45 .DAEETWHWQLGDALELLI.....YDTC.T....EQ.VQHVI-VDAAE.RG.....EPMHVVPAG
  46 hGGDEIWTFLSGVPLSLFQ.....HSDA.A....DG.SHEQV----IS.ED.....QPLAWVPAG
  47 dGADEIWIHLQGAPLSLWR.....LDPI.S....NE.IVRLT----LD.AA.....QPMQMIPAG
  48 .DAAEVWHYYAGSPLVLSV.....SFNN.G....SCgKDYVMGPDLFG.GQ.....RPQAVVEKS
  49 .DADEVWLWHGPASVKLELgg7tpESDE.S....KR.TVITLGSGITT.DQadvtvSGHAVVPAG
  50 .INRIIHILQRGKGQYVLV.....-YPD.G....QV.KSFKVGFDYKN.GE.....VSQWVVPGG
  51 .DADEVWLWHGPASVKLELgg7tpESDE.S....KR.TVITLGSGITT.DQadvtvSGHAVVPAG
  52 .RSRVIHTLHRGRGRYVL-.....LHPD.G....RI.ESFVVGNAVER.GE.....RLQWIVEGD
  53 .PMAETWHFYLGEPLTVIR.....SLST.R....SL.Q----------.--.....---------
  54 .HGG---------------.....----.-....--.-----------.--.....---------


         110                  120       130       140          150     
          |                    |         |         |            |     
   1 CIFGSAM.....NQD.....G.FSLVGCMVSPGFTFDDFELFSQEALLAM...YPQHKAVVQKLS
   2 CIFGSAM.....NQD.....G.FSLVGCMVSPGFTFDDFELFSQEALLAM...YPQHKAVVQKLS
   3 CWFGAE-.....TTG.....D.YSLVGCTVAPGFDFADFEMGSRADLLGR...FPTHAGIIRRLT
   4 CIFGSAM.....NQP.....G.FSLVGCMVSPGFTFNDFELFNQETLMAM...YPQHEDIIRRLS
   5 TIWGST-.....VDK.....D.YALVSCLVAPGFEFEDFELFERADLLAT...YPEHKEMIEHLT
   6 GWFASRVk....NGG.....D.YALVGCTVAPGFDFQDFELANREDLLKL...YPRSAEIINQLT
   7 AWFGATVd....APD.....S.FSLVGCTVAPGFDFRDFELGDRQQLQQQ...FPQHQRLIERL-
   8 YIFGSAM.....NNE.....G.FSLVGCMVAPGFDFKDFELFEREDLLEK...YPKYKEVIEKL-
   9 VWFGATVa....AET.....G.FSLVGCTVAPGFSFEDFEMAEAEVLLQL...FPRSRSLIEQ--
  10 RWFGARCa....APE.....H.VALVGCTVAPGFEFSEFELADATALAAA...FPQYAEHVAALA
  11 HWFAAERvps..GSQ.....D.FSLLGCTVAPGFEFSEFELADALELVAI...FPRQADLIHRLS
  12 SWFAAELa....RPG.....G.YALAGCTVAPGFEFSEFELADAAVLRRL...YPAQADLIARL-
  13 TIWGST-.....VDK.....D.DALVSCLVAPGFEFEDFELFERVDLLAT...YPEHKEMIERLT
  14 LWFAAECa....DPA.....T.FALVGCTVAPGFEFSEFELADVHVLKAR...HPRHAALIERL-
  15 TIFGST-.....VAT.....G.FALVSCVVTPGFEFEDFELFTQAELLND...YPQHSEIIQHLA
  16 SWFGARCa....LPE.....H.VALVGCTVAPGFEFAEFELADAAALAAA...FPDYAEHVVQLA
  17 SYFAAEIt....EKN.....S.FAIIGCTVSPGFDFEDFELASKNELLKK...YPKHHKLIEK--
  18 TIFASTLd....SAE.....G.YSLVGCMCQPGFEYEHFELLTQEYLIRQ...YPQYESIIKRLA
  19 RWFAAERva...GAH.....G.YTLVGCTVAPGFEFSEFALAESRALLES...HSAHGDLILRLA
  20 CWFAAERvv...GAA.....G.YALAGCTVAPGFEFSEFELADRDELARLassHPRHAALIT---
  21 VWFGSFP.....TKDv19enH.FSLVGCTCAPAFQFEDFELAKRSDLLSR...FPQHESLITMLS
  22 HWFGASLseqadAPG.....T.YALVSCVVAPGFDFRDLTFADPAALTAQ...FPAHAQIIEKL-
  23 VWFGSFP.....TKDv19enH.FSLVGCTCAPAFQFEDFELAKRSDLLSR...FPQHESLITMLS
  24 VWFGSFP.....TLDv21elH.YSLVGCTCAPGFQYEDFEMANFDDVKSI...APKAEPFLKY--
  25 CWFASNV.....EAEy....S.YALIGCTVAPGFHFDDFESAQRKTLSEK...YPQLKDIIHKF-
  26 SWFAAELa....RPG.....G.YALAGCTVAPGFEFSEFNWPTPPCCGAC...TP----------
  27 TIFASSI.....EFS.....NtYSLVGCMCQPAFEFKQFELFKQSELITQ...YPHLKSVIEKY-
  28 IWKASRLln...GEN.....G.FGLISEAVSPGFDFADMEMGNRQKLTAR...YPQHRALIEKLT
  29 HWQTAT-.....SLG.....A.WTLVGCTVSPGFDFAGFEMAP-------...------------
  30 WWQSAR-.....SLG.....E.WTLVGCTVAPGFDFAAFELAEPG-----...------------
  31 VWFAQE-.....-VD.....G.YCLASVLVAPGFDFKDFSLGKREELIKE...YPQHRDVIMRCT
  32 WWQSAT-.....SLG.....E.WTLVGCTVAPGFDFASFEMAHP------...------------
  33 TWMGGRV.....GAG.....GaWSLFGCTMAPGFTYGDYEHGDAADLTAR...YPAEAARIVSLC
  34 WWQTAV-.....SLG.....A.WTLVGCTVAPGFRFEGFEMAPP------...------------
  35 EWQHAL-.....SLG.....D.WTLVGCSVAPAFEFEGFEMAQPG-----...------------
  36 AWQMAE-.....TTG.....E.WTLVGCTVAPAFEFAKFELAP-------...------------
  37 CWQAAV-.....PMG.....E.WTLVGCTVSPAFDFAGFEMAP-------...------------
  38 AWQAAT-.....STG.....E.WTLVGCTVAPGFDFAGFELAPP------...------------
  39 TWMGARVv....AGG.....A.WSLFGCTMAPGFTYGGYEHGDAGELSVR...YPAEAARIAGLC
  40 CWQSAE-.....SLG.....D.FTLVGCTVSPGFAFSSFVMAEPG-----...------------
  41 HWQAAR-.....STG.....D.WSLVGCTVSPGFRFEGFELAP-------...------------
  42 CWQAAR-.....SLG.....D.FTLVGCTVSPGFVWEGFALLEDGSP---...------------
  43 YWQAAS-.....STG.....E.FTLTSCCVGPGFDFNDFQMLRN------...------------
  44 QWQRAE-.....SLG.....E.WTLVGCHVAPGFVLEGFELAEDG-----...------------
  45 CWQAAR-.....SLG.....D.FTLVGCTVSPGFVWEGFALLDKA-----...------------
  46 VWMAAR-.....SQG.....D.YSLVSCCVGPGFSFDDFEMLRDRARSEW...PK----------
  47 CWQAAC-.....SQG.....A.YTLVSCCVGPGFDFEDFKMLR-------...------------
  48 QWQSAK-.....SLG.....E.WTLVGTTVAPGFDPNG------------...------------
  49 VWQRTV-.....PGQ.....G.DALVSCVVSPGFVFDGFT----------...------------
  50 VFKASFLlpne.EFD.....N.GFLISEVVVPGFDFEDHTFLKGEDELK-...------------
  51 VWQRTV-.....PGQ.....G.DALVSCVVSPGFVFDGFT----------...------------
  52 VWKASYL.....LPSe13etD.GLLISETVVPGFEYEDHAFLTHQGIKEL...L-----------
  53 -------.....---.....-.----------------------------...------------
  54 -------.....---.....-.----------------------------...------------


        160
         |
   1 RPEVN
   2 RPEV-
   3 R----
   4 R----
   5 -----
   6 -----
   7 -----
   8 -----
   9 -----
  10 -----
  11 -----
  12 -----
  13 -----
  14 -----
  15 YRE--
  16 -----
  17 -----
  18 ISQ--
  19 -----
  20 -----
  21 -----
  22 -----
  23 -----
  24 -----
  25 -----
  26 -----
  27 -----
  28 R----
  29 -----
  30 -----
  31 -----
  32 -----
  33 -----
  34 -----
  35 -----
  36 -----
  37 -----
  38 -----
  39 -----
  40 -----
  41 -----
  42 -----
  43 -----
  44 -----
  45 -----
  46 -----
  47 -----
  48 -----
  49 -----
  50 -----
  51 -----
  52 -----
  53 -----
  54 -----